BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0180.p
         (327 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312029|ref|YP_003776121.1| Na+-dependent transporter prote...   525   e-150
gi|300309858|ref|YP_003773950.1| Na+-dependent transporter prote...   268   5e-73

>gi|300312029|ref|YP_003776121.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score =  525 bits (1353), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 260/322 (80%), Positives = 292/322 (90%), Gaps = 1/322 (0%)

Query: 1   MARPRFLPDNLTLMLFAVVLTASLFPCTGVVAVGFDWLTTFMIGLLFFMHGAKLSREAVI 60
           MARPRFLPDN+TL+L AVV+TASL PCTG VA  FD LTTFMIGLLFFMHGAKLSREAV+
Sbjct: 1   MARPRFLPDNMTLLLLAVVVTASLLPCTGQVAEVFDGLTTFMIGLLFFMHGAKLSREAVV 60

Query: 61  AGMVHWRLHVTVLLCTFAVFPVLGLILKPALLLVITPDLYLGILFLCVLPSTVQSSIAFT 120
           AG  HW+LHVTVLLCTFA+FP++GL  KP L   ITP+LYLG+LFLCVLPSTVQSSIAFT
Sbjct: 61  AGFTHWKLHVTVLLCTFALFPLVGLAFKPLLTPFITPELYLGLLFLCVLPSTVQSSIAFT 120

Query: 121 SVARGNVPAAICAASASNLLGIFLTPLMVGVIIVAHN-AEHSSLGSILKIVYQLLLPFVA 179
           SVARGNVPAAICAASASNLLGIFLTPL+VG ++VAH  A HSSL SILKIVYQLLLPFVA
Sbjct: 121 SVARGNVPAAICAASASNLLGIFLTPLLVGALVVAHEGAGHSSLDSILKIVYQLLLPFVA 180

Query: 180 GQIARPWIGAWMDRNKSWLRWVDQSSVLLVVYVAFSEAVNQGLWRQVPPVMLVSLIVISC 239
           GQIARPWIG W++RNKSWL++VDQSS+LLVVYVAFSEAV QGLW QVP  MLV+L+VI+ 
Sbjct: 181 GQIARPWIGRWIERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPMSMLVALLVINA 240

Query: 240 LLLAIIMSITTFGSRRLGFNKEDEITIVFCGSKKSLASGVPMAKVLFASQTVGMVLLPLM 299
           +LLA+IM++TT+GSRRLGF+KEDEITIVFCGSKKSLASGVPMAKVLF+S  +GMVLLP+M
Sbjct: 241 VLLALIMALTTYGSRRLGFSKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVM 300

Query: 300 LFHQIQLMVCAILAQRYGNRPE 321
           LFHQ+QLMVCA+LA RYG R E
Sbjct: 301 LFHQLQLMVCAVLAARYGARQE 322


>gi|300309858|ref|YP_003773950.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  268 bits (685), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 155/283 (54%), Positives = 208/283 (73%), Gaps = 1/283 (0%)

Query: 39  TTFMIGLLFFMHGAKLSREAVIAGMVHWRLHVTVLLCTFAVFPVLGLILKPALLLVITPD 98
           +   I LLFF+HGAKLSREA +AG+   RLH+  L  TF +FP+LGL LK     ++TP 
Sbjct: 5   SNVAISLLFFLHGAKLSREAALAGLKQPRLHLLTLGSTFLLFPLLGLGLKAVAPDLLTPQ 64

Query: 99  LYLGILFLCVLPSTVQSSIAFTSVARGNVPAAICAASASNLLGIFLTPLMVGVIIVAHNA 158
           L++G+LF+C L STVQSSI FTS+ARGNVPAAIC A+ASNLLGI +TPL+V +++  H+ 
Sbjct: 65  LWMGVLFVCTLSSTVQSSIGFTSIARGNVPAAICGATASNLLGILVTPLLVTLLLHRHH- 123

Query: 159 EHSSLGSILKIVYQLLLPFVAGQIARPWIGAWMDRNKSWLRWVDQSSVLLVVYVAFSEAV 218
           E + L  +L I+ QLLLPFV G + RPWIG W++R+K  +  VD+  +LL VY AFS AV
Sbjct: 124 EANGLSQVLSILLQLLLPFVLGNLLRPWIGDWINRHKVIVNVVDRGGILLSVYAAFSAAV 183

Query: 219 NQGLWRQVPPVMLVSLIVISCLLLAIIMSITTFGSRRLGFNKEDEITIVFCGSKKSLASG 278
            QG+W   PP  L  L++++ +LL  ++ ITT+G+R L   + DEI +VFCGSKKSLASG
Sbjct: 184 AQGIWHLFPPGQLALLVLVNAMLLGAVLLITTYGARALKMPRGDEIVLVFCGSKKSLASG 243

Query: 279 VPMAKVLFASQTVGMVLLPLMLFHQIQLMVCAILAQRYGNRPE 321
           +P+A VLFA     +VLLP+MLFHQ+QLM+CA+LA+RY  + +
Sbjct: 244 IPIASVLFAGSGAAVVLLPIMLFHQMQLMLCAVLARRYAAQQD 286


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.141    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 968,451
Number of extensions: 37580
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 2
Length of query: 327
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 242
Effective length of database: 1,217,395
Effective search space: 294609590
Effective search space used: 294609590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 131 (55.1 bits)