BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0178.p
         (289 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312032|ref|YP_003776124.1| high-affinity Fe2+/Pb2+ permeas...   414   e-117

>gi|300312032|ref|YP_003776124.1| high-affinity Fe2+/Pb2+ permease
           [Herbaspirillum seropedicae SmR1]
          Length = 290

 Score =  414 bits (1065), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/289 (78%), Positives = 257/289 (88%)

Query: 1   MGQVLFIVWRESVEALLVVGILYAWLNNGDAAARRGLPYLWGGVAAGIVAALALGAALLG 60
           MGQV+FIVWRESVEALLVVGILYAWL NGD AARRGLPYLWGGV AG+V A ALGAALLG
Sbjct: 1   MGQVMFIVWRESVEALLVVGILYAWLKNGDVAARRGLPYLWGGVVAGVVLAAALGAALLG 60

Query: 61  FSELLSGDAQTYFQIGMVLIAAVLIVQMVFWMRKHGRTLKKDMESSMKANYEAGNWWGVF 120
           FSELLSGDAQTYFQI +VLIAAVLIVQMVFWMRKHGRTLKK+MESSM+A+Y++GNWWGVF
Sbjct: 61  FSELLSGDAQTYFQIAIVLIAAVLIVQMVFWMRKHGRTLKKEMESSMQASYDSGNWWGVF 120

Query: 121 LLVALAIAREGSETAVFLYGIGMGEQDASRGALIFAGVLGFALAFLTFYLLQLGGKVFSW 180
           +LV LAIAREGSETAVFLYGIG+G+QDAS  +L+ AGV+GF LAFLTFYLLQLGGK+FSW
Sbjct: 121 VLVMLAIAREGSETAVFLYGIGLGQQDASTASLVLAGVIGFGLAFLTFYLLQLGGKIFSW 180

Query: 181 RRFFQVTEIILLLLAAGLLLTGVEKLLDLLLESSDWFSSLGFVSTLTAPVWDTSWLLDDS 240
           RRFFQVTE+ILLLLA+GLL+TGVEKL D+LLESSD  +S  +  TLTAPVWDTS LLDDS
Sbjct: 181 RRFFQVTEVILLLLASGLLVTGVEKLFDVLLESSDMLASADWTMTLTAPVWDTSMLLDDS 240

Query: 241 STAGSLISTLTGYRARPALMSIAIYVIYWLVISSALGKSKSTQVNRQAA 289
           +T GSL+STLTGYRARPAL+S+ +Y +YW V+ SAL +    Q  RQ A
Sbjct: 241 TTLGSLVSTLTGYRARPALLSVIVYALYWAVVCSALYRKPQPQPKRQEA 289


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 696,112
Number of extensions: 22362
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,222,130
Effective search space: 250536650
Effective search space used: 250536650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)