BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0175.p
         (201 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310575|ref|YP_003774667.1| HD phosphohydrolase [Herbaspiri...   260   5e-71

>gi|300310575|ref|YP_003774667.1| HD phosphohydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 192

 Score =  260 bits (665), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 127/185 (68%), Positives = 149/185 (80%), Gaps = 6/185 (3%)

Query: 14  MSLTLPDIELLFRRHGHAQYTGEPVTQLEHALQTATLAERENAAPALIAAALLHDLGHML 73
           M+L+L D+ +LF RHGH QY GEPVTQLEHALQTA LAE++ A+ +LI A+LLHDLGHML
Sbjct: 1   MALSLDDVAVLFARHGHTQYAGEPVTQLEHALQTALLAEQQGASASLIVASLLHDLGHML 60

Query: 74  EDASAGYDIHDTPTANGIDDLHQYRILPFLRAIFGEDVLAPIRLHVDAKRYLCAVEPAYF 133
           ED      + DTPT +G+DDLHQ+RI PFLR +FG++VLAPI LHVDAKRYLCA +P YF
Sbjct: 61  ED------LGDTPTLSGVDDLHQWRIQPFLRGLFGDEVLAPIALHVDAKRYLCATDPGYF 114

Query: 134 SSLSADSVRSLQLQGGVFDRQQAEDFIAMPHAVDATRLRRWDDLAKTAGLATPDYAHFSR 193
            +LSADSVRSL LQGG+FD +QA  FI  P+A DA RLRRWDD AKTAGLATPDY HFS+
Sbjct: 115 GALSADSVRSLALQGGIFDVEQAAAFIDRPYARDAVRLRRWDDQAKTAGLATPDYQHFSQ 174

Query: 194 YLTLC 198
           Y   C
Sbjct: 175 YFRHC 179


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 636,000
Number of extensions: 23628
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,236,335
Effective search space: 148360200
Effective search space used: 148360200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)