BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0174.p (524 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 439 e-124 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 430 e-121 gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 429 e-121 gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra... 403 e-113 gi|300310620|ref|YP_003774712.1| methyl-accepting chemotaxis tra... 375 e-105 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 439 bits (1129), Expect = e-124, Method: Compositional matrix adjust. Identities = 266/520 (51%), Positives = 348/520 (66%), Gaps = 5/520 (0%) Query: 3 NWKVGTRFAAGFGVVLLMMAIVAAMGIWRLQSVAEATNAMMQMPLAKERLISDWYSNIST 62 N +G R GF ++L I+A +G+WRL VA+AT MM PL ERL++DWY+N+ Sbjct: 6 NMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWYTNLVA 65 Query: 63 SITRTTAIARSTDLSLAGYFETATGDAAKNAAALQAKVQRLLDTPEEQKLFADIDANRKA 122 I RT AIA+S+D +L YF ++K++ Q +V+ LL TPEE+ LF I RK Sbjct: 66 GIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIGELRKL 125 Query: 123 YHEAGNTILALRAEGKLFQAKNAFEKNYLPSAARYQASVDKLLRLQRQGIDRVAGSIDAT 182 Y + + I +A G +A ++ ++P+A YQ ++ KL+ QR+ +D A IDA Sbjct: 126 YLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAREIDAI 185 Query: 183 YRSSRLVLLALSAAAVLFGIAAAIVLTRSLLRQLGGEPAYAVRVADRIASGDLTETIRLA 242 SR ++L L +L GI A LT + + L AV V+ +A GDL+ I + Sbjct: 186 AAKSRTLILVLEGLILLLGIVFARYLTLGITKPLH----RAVDVSRCVAEGDLSSEIAVT 241 Query: 243 DNDET-SLIHAMKTMQGNLARSVDHIKQSAETIGTASKEISVGNLNLSSRTERQAGSLQE 301 DET L+ ++K M +L V +++ +TI TAS EI+ GNL+LSSRTE+QA SL E Sbjct: 242 SRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASSLAE 301 Query: 302 TASVMQQLTSAVKKNAESALHANQLAASASQVAIAGGNAVNQMVGTMATINESSRKIVDI 361 TAS M++L S V++NA++A A+QLA SAS VA GG V+Q+V TM IN SSRKIVDI Sbjct: 302 TASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKIVDI 361 Query: 362 ISVINGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSAGAAKEIKSLIDDS 421 ISVI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSA AAKEIK LI+DS Sbjct: 362 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELINDS 421 Query: 422 VGKIVSGRTLVEEAGATIGQVVDSIRTLSDFVADISNASLEQSTGIEQVNQAIMQMDDVT 481 VGK+ G LVE+AG T+ +VV S+R ++D VA+IS AS EQ+ GIEQ+N AI QMD VT Sbjct: 422 VGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQVT 481 Query: 482 QHNAALVEEATAAAQSLLDQAGSLVTVVNTFKLSSSRELV 521 Q NAALVEEA AAA S+ QAG L+ +V+ F+LS LV Sbjct: 482 QQNAALVEEAAAAAASMQTQAGRLMQMVSVFRLSEREPLV 521 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust. Identities = 256/515 (49%), Positives = 343/515 (66%), Gaps = 5/515 (0%) Query: 1 MKNWKVGTRFAAGFGVVLLMMAIVAAMGIWRLQSVAEATNAMMQMPLAKERLISDWYSNI 60 MKN K+G R A GF +L++MA++ A+G+WRL S+ +AT+ M ++ L KER W++ I Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60 Query: 61 STSITRTTAIARSTDLSLAGYFETATGDAAKNAAALQAKVQRLLDTPEEQKLFADIDANR 120 + RT A+ +S D + YF+ + + LQ +V+ + EE++LF ++ R Sbjct: 61 KENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLR 120 Query: 121 KAYHEAGNTILALRAEGKLFQAKNAFEKNYLPSAARYQASVDKLLRLQRQGIDRVAGSID 180 AY +I ++ G +A+ + + Y V + Q+Q ID+ A +I+ Sbjct: 121 AAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAIN 180 Query: 181 ATYRSSRLVLLALSAAAVLFGIAAAIVLTRSLLRQLGGEPAYAVRVADRIASGDLTETIR 240 YRS R +LLAL A ++ G A A +LTRS+ R L AV +A+ +A+GDLT I Sbjct: 181 RDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLN----QAVTIAETVAAGDLTSRID 236 Query: 241 LADNDET-SLIHAMKTMQGNLARSVDHIKQSAETIGTASKEISVGNLNLSSRTERQAGSL 299 + DET L+ A+KTM GNL V ++ ETI TAS+EI+ GNL+LS+RTE QAGSL Sbjct: 237 SSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSL 296 Query: 300 QETASVMQQLTSAVKKNAESALHANQLAASASQVAIAGGNAVNQMVGTMATINESSRKIV 359 +ETAS M+QLTS VK+NA++A AN+LAASASQVA GG V+Q+V TM I+ SS+KI Sbjct: 297 EETASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIA 356 Query: 360 DIISVINGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSAGAAKEIKSLID 419 DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AAKEIK LID Sbjct: 357 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLID 416 Query: 420 DSVGKIVSGRTLVEEAGATIGQVVDSIRTLSDFVADISNASLEQSTGIEQVNQAIMQMDD 479 DSV K+ G LV AG T+ +VV S+ ++ V +I+ AS EQS GIEQVN AI +D+ Sbjct: 417 DSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDE 476 Query: 480 VTQHNAALVEEATAAAQSLLDQAGSLVTVVNTFKL 514 TQ NAALVE+A AAA+S+ DQA SL V+ F+L Sbjct: 477 TTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRL 511 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 429 bits (1104), Expect = e-121, Method: Compositional matrix adjust. Identities = 276/516 (53%), Positives = 355/516 (68%), Gaps = 8/516 (1%) Query: 3 NWKVGTRFAAGFGVVLLMMAIVAAMGIWRLQSVAEATNAMMQMPLAKERLISDWYSNIST 62 N K+G R A GF V+L ++V A+ IWRLQ +A AT+ MM PL KERL+SDWY I T Sbjct: 6 NMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTKERLVSDWYRTIHT 65 Query: 63 SITRTTAIARSTDLSLAGYFETATGDAAKNAAALQAKVQRLLDTPEEQKLFADIDANRKA 122 S+ RTTAIA+S+D SLA +F A++ + Q ++ L+++ +E+ +F + RK Sbjct: 66 SVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLGEVRKD 125 Query: 123 YHEAGNTILALRAEGKLFQAKNAFEKNYLPSAARYQASVDKLLRLQRQGIDRVAGSIDAT 182 Y + + I +AEG+ +A + + Y + +LL LQR ID+VA I Sbjct: 126 YIKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQRANIDQVAAHIQTV 185 Query: 183 YRSSRLVLLALSAAAVLFGIAAAIVLTRSLLRQLGGEPAYAVRVADRIASGDLTETI--R 240 YR SR ++LAL+ V+ G A L + R L AV VA+ +A+GDLT I R Sbjct: 186 YRESRNLMLALAFLQVVLGWLFARTLALGITRPL----EQAVEVAEAVAAGDLTHRIDER 241 Query: 241 LA-DNDET-SLIHAMKTMQGNLARSVDHIKQSAETIGTASKEISVGNLNLSSRTERQAGS 298 LA DET L+HA+ M GNLAR V ++ + I TASKEI+ GNL+LS+RTERQAG+ Sbjct: 242 LAARGDETGKLMHALHAMTGNLARIVGQVRGGTDAIATASKEIATGNLDLSARTERQAGA 301 Query: 299 LQETASVMQQLTSAVKKNAESALHANQLAASASQVAIAGGNAVNQMVGTMATINESSRKI 358 L+ETAS M++LTS V +NA++A ANQLAASAS VA GG V+Q++ TM +INESSRKI Sbjct: 302 LEETASAMEELTSTVSQNADNARQANQLAASASSVAQQGGEVVSQVISTMGSINESSRKI 361 Query: 359 VDIISVINGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSAGAAKEIKSLI 418 VDIISVI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AAKEIK+LI Sbjct: 362 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKALI 421 Query: 419 DDSVGKIVSGRTLVEEAGATIGQVVDSIRTLSDFVADISNASLEQSTGIEQVNQAIMQMD 478 DDSV K+ SG LV AG+T+ +VV S+R ++D V++IS AS EQS GI QVN AI MD Sbjct: 422 DDSVAKVGSGSELVTRAGSTMDEVVASVRQVADIVSEISAASSEQSDGISQVNLAITDMD 481 Query: 479 DVTQHNAALVEEATAAAQSLLDQAGSLVTVVNTFKL 514 TQ NAALVEEA AAA+++ +QA L VV+ FKL Sbjct: 482 QTTQQNAALVEEAAAAAEAMQEQAARLSEVVSQFKL 517 >gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 403 bits (1036), Expect = e-113, Method: Compositional matrix adjust. Identities = 246/519 (47%), Positives = 350/519 (67%), Gaps = 7/519 (1%) Query: 1 MKNWKVGTRFAAGFGVVLLMMAIVAAMGIWRLQSVAEATNAMMQMPLAKERLISDWYSNI 60 +K+ ++G+R AGF VVL+ +VAA+GIWRL++VA T MM +PL ERL+S W + + Sbjct: 2 IKDIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAVQTQQMMDVPLKTERLVSQWNTLL 61 Query: 61 STSITRTTAIARSTDLSLAGYFETATGDAAKNAAALQAKVQRLLDTPEEQKLFADIDANR 120 +I RTT + +S D L + ++K +A V++LL + EE+K+FA I+ R Sbjct: 62 LIAIQRTTTVVKSHDPELEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKMFAAINVAR 121 Query: 121 KAYHEAGNTILALRAEGKLFQAKNAFEKNYLPSAARYQASVDKLLRLQRQGIDRVAGSID 180 K + + I A + +G Q + ++K Y+ A Q ++ LL +R ID+++ I Sbjct: 122 KQFLTIRDQIYAAKKQGDAAQVEELYQKQYVGIAKSTQDAMRALLDFERARIDQISAQIQ 181 Query: 181 ATYRSSRLVLLALSAAAVLFGIAAAIVLTRSLLRQLGGEPAY-AVRVADRIASGDLTETI 239 SS+ ++ L +L GIA A++LTRS+ R P + A+ ++ R+A+GDLT Sbjct: 182 QDASSSQHQIMLLEVVILLCGIAFAVLLTRSITR-----PVHVALAISQRVAAGDLTSRA 236 Query: 240 RLADNDET-SLIHAMKTMQGNLARSVDHIKQSAETIGTASKEISVGNLNLSSRTERQAGS 298 + DE L+ +++ M L V ++ A++I AS EI+ GNL+LS+RTE QAG+ Sbjct: 237 QAMGRDELGQLVASLQGMSERLHGVVSTVRHGADSIAMASGEIANGNLDLSARTEEQAGA 296 Query: 299 LQETASVMQQLTSAVKKNAESALHANQLAASASQVAIAGGNAVNQMVGTMATINESSRKI 358 L++TA+ +++LTS+V+ N+++A AN+L ++A+ VA GG ++Q++ TMATIN+SSRKI Sbjct: 297 LEQTAASIEELTSSVRTNSDNAHQANELVSTAASVAGQGGAVMDQLISTMATINDSSRKI 356 Query: 359 VDIISVINGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSAGAAKEIKSLI 418 VDII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRALAQRSA AAKEIK LI Sbjct: 357 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLI 416 Query: 419 DDSVGKIVSGRTLVEEAGATIGQVVDSIRTLSDFVADISNASLEQSTGIEQVNQAIMQMD 478 DDSVGK+ +G TLVE+AG T+ +VV S++ V +IS AS +Q+ GI QVNQA+ QMD Sbjct: 417 DDSVGKVSAGSTLVEQAGKTMQEVVGSVQGAHTLVGEISTASRQQAEGIHQVNQAVGQMD 476 Query: 479 DVTQHNAALVEEATAAAQSLLDQAGSLVTVVNTFKLSSS 517 VTQ NAALVE+A AAA+SL DQA L V F L ++ Sbjct: 477 GVTQQNAALVEQAAAAAKSLEDQAAQLKRAVAFFSLQAA 515 >gi|300310620|ref|YP_003774712.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 573 Score = 375 bits (964), Expect = e-105, Method: Compositional matrix adjust. Identities = 238/525 (45%), Positives = 332/525 (63%), Gaps = 23/525 (4%) Query: 3 NWKVGTRFAAGFGVVLLMMAIVAAMGIWRLQSVAEATNAMMQMPLAKERLISDWYSNIST 62 N KV + GF +V L+ A + GI + + + M ++ + R + ++S+ Sbjct: 6 NLKVSHKLIGGFMIVALIGATIGTFGIIKAGQINDLATEMYELQVVGLRHSAQATLDLSS 65 Query: 63 S--ITRTTAIARSTDLSLAGYFETATGDAAK----NAAALQAKVQRLLDTPEEQKLFADI 116 S RT +A S E + D K AL QR + TPE + L A Sbjct: 66 SNRAIRTAILAES-----PAEREASLNDLTKRLDNTTLALNEAEQRFV-TPEGKALVAKA 119 Query: 117 DANRKAYHEAGNTIL----ALRAEGKLFQAKNAFEKNY---LPSAARYQASVDKLLRLQR 169 R+A+ + N ++ LR E L A+ + + + P A +A++ KL+ +++ Sbjct: 120 ---REAFTKYKNAVMQTAEELRKE-PLADARQSTSRLFSSVRPLANEAEANMLKLMEVKK 175 Query: 170 QGIDRVAGSIDATYRSSRLVLLALSAAAVLFGIAAAIVLTRSLLRQLGGEPAYAVRVADR 229 DR+ D Y R +LL L+ VLFGIA + ++R+L RQLGGEP AD Sbjct: 176 DNADRLNDETDLIYAHIRTLLLVLTFGGVLFGIALGLFISRNLTRQLGGEPRDVAAAADA 235 Query: 230 IASGDLTETIRLADNDETSLIHAMKTMQGNLARSVDHIKQSAETIGTASKEISVGNLNLS 289 IASGDL+ I ++ + S++ AM MQG+L + V ++ S+E+I T S++I+ GNL+LS Sbjct: 236 IASGDLSTHIDISHAAQGSVVSAMHMMQGSLRKVVQTVRTSSESIATGSRQIATGNLDLS 295 Query: 290 SRTERQAGSLQETASVMQQLTSAVKKNAESALHANQLAASASQVAIAGGNAVNQMVGTMA 349 +RTE+QA +L+ETAS M++LTS VK NA +A +A ++AA+AS VA GG V Q+V TM+ Sbjct: 296 ARTEQQASALEETASSMEELTSTVKHNASNAQNAKEMAATASTVAQEGGEVVAQVVDTMS 355 Query: 350 TINESSRKIVDIISVINGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSAG 409 INESSRK+ DIISVI+GIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR LAQRSA Sbjct: 356 AINESSRKMADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAA 415 Query: 410 AAKEIKSLIDDSVGKIVSGRTLVEEAGATIGQVVDSIRTLSDFVADISNASLEQSTGIEQ 469 AAKEIK+LI+DSV K+ G L ++AG T+ +V++ ++ + +IS AS EQ+ GIEQ Sbjct: 416 AAKEIKALIEDSVDKVTVGARLADQAGTTMSGIVENAGKVTSIIGEISAASTEQTAGIEQ 475 Query: 470 VNQAIMQMDDVTQHNAALVEEATAAAQSLLDQAGSLVTVVNTFKL 514 +NQAIMQMDDVTQ NA+LVEEA AA+++L DQA +L +V+ F L Sbjct: 476 INQAIMQMDDVTQQNASLVEEAAAASRALQDQADALAQIVSIFNL 520 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.125 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,095,725 Number of extensions: 34125 Number of successful extensions: 470 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 287 Number of HSP's successfully gapped: 70 Length of query: 524 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 434 Effective length of database: 1,193,720 Effective search space: 518074480 Effective search space used: 518074480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)