BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0169.p
         (331 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312078|ref|YP_003776170.1| hypothetical protein Hsero_2767...   427   e-121

>gi|300312078|ref|YP_003776170.1| hypothetical protein Hsero_2767
           [Herbaspirillum seropedicae SmR1]
          Length = 534

 Score =  427 bits (1097), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/333 (69%), Positives = 268/333 (80%), Gaps = 4/333 (1%)

Query: 1   MQKKPDQ-SPVDIAREAFQQLATRRIAPTPDAYREAYEEIVGTKSDLKPEGVLTAFAQHL 59
           M KKP   +PV+IAREAFQ+L  RRIAPTPDAYR AYEEI G       E VL AFA  L
Sbjct: 1   MSKKPSTLTPVEIAREAFQRLGARRIAPTPDAYRIAYEEIQGDGPGASAESVLAAFATKL 60

Query: 60  TQQPGDIGKLGLRLTMAINGSDWKDYNDELDNFVEQYFPSRNLVP---HGQLVPIDPERE 116
           ++QPG+ G LG RL  A   +DW ++  +L  F E+ + +R L P   HG+LVPID ERE
Sbjct: 61  SRQPGENGLLGTRLVRARENNDWAEFERQLIEFAEENWQNRPLGPQVQHGELVPIDLERE 120

Query: 117 FIRDSKKEKMLREVLARVLIFNMASLLIEAPELANESKSIGLDLKTAFSEQAMNEVIGRL 176
           FIRDSKKEKMLRE+LARVL+FN+ SLL  APELANES++ G +LKTAFSEQAMNE+I RL
Sbjct: 121 FIRDSKKEKMLREMLARVLVFNLPSLLSTAPELANESRNSGQELKTAFSEQAMNEIIARL 180

Query: 177 KQMSFQIELKSEDIALQQELLMRLFQLLLENIHGLLEKGSWLSSQITAVQELINGPISKT 236
           KQ+SFQIELK++D+A QQ+LLMRLFQLLLENI+GLLE+GSWLSSQI  VQ LI GP+S T
Sbjct: 181 KQLSFQIELKTDDMAQQQDLLMRLFQLLLENINGLLEQGSWLSSQIETVQSLIAGPLSTT 240

Query: 237 SLADATKTLKEVIFKQGLLKNTLSEEKVTAKNMMLTFVDRLSAMVSTTDNYHKTIATFSQ 296
           SLADATK LKEVI+KQGLLKNTLSEEKV  KNMMLTFVDRLSAMVSTTDNY +TI  FSQ
Sbjct: 241 SLADATKNLKEVIYKQGLLKNTLSEEKVVVKNMMLTFVDRLSAMVSTTDNYQRTIRGFSQ 300

Query: 297 QISQASDISDLNSVLNGIMNATKDAQDEALRAR 329
           QISQA +I+DLNSVL+ IM  T+ AQ+EA R+R
Sbjct: 301 QISQAGNIADLNSVLSEIMTETQKAQEEATRSR 333


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 820,006
Number of extensions: 29599
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,212,660
Effective search space: 297101700
Effective search space used: 297101700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)