BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0162.p
         (570 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312083|ref|YP_003776175.1| CTP synthase [Herbaspirillum se...  1016   0.0  

>gi|300312083|ref|YP_003776175.1| CTP synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 556

 Score = 1016 bits (2627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/538 (92%), Positives = 520/538 (96%), Gaps = 1/538 (0%)

Query: 18  MTKFVFVTGGVVSSLGKGIAAASLAAILESRGLRVTLLKLDPYINVDPGTMSPFQHGEVF 77
           MTKFVFVTGGVVSSLGKGIAAASLAAILESRGL+VTLLKLDPYINVDPGTMSP QHGEVF
Sbjct: 1   MTKFVFVTGGVVSSLGKGIAAASLAAILESRGLKVTLLKLDPYINVDPGTMSPLQHGEVF 60

Query: 78  VTDDGAETDLDLGHYERFITAKMKKVNNFTTGQIYESVIRKERRGEYLGKTVQVIPHITN 137
           VTDDGAETDLDLGHYERFI+AKMKKVNNFTTGQ+YESVIRKERRGEYLGKTVQVIPHITN
Sbjct: 61  VTDDGAETDLDLGHYERFISAKMKKVNNFTTGQVYESVIRKERRGEYLGKTVQVIPHITN 120

Query: 138 EIQDFIHRGAEGYDVALVEIGGTVGDIESLPFLEAARQLSLRAGRNAAAFVHLTLVPFLA 197
           EIQ+FIHRGAEG++VALVEIGGTVGDIESLPFLEAARQLSLR+GRNA AFVHLTLVPFLA
Sbjct: 121 EIQEFIHRGAEGFEVALVEIGGTVGDIESLPFLEAARQLSLRSGRNATAFVHLTLVPFLA 180

Query: 198 SAGELKTKPTQHSVQKLREIGISPDALLCRADRRIPDDERDKISLFSNVVVDAVISVWDA 257
           SAGELKTKPTQHSVQKLREIGI PDALLCRADRRIPDDERDKISLFSNV  DAVISVWDA
Sbjct: 181 SAGELKTKPTQHSVQKLREIGILPDALLCRADRRIPDDERDKISLFSNVAADAVISVWDA 240

Query: 258 DSIYKIPQMLHDQGLDNIICEKLGLSPSPADLSMWDKLIHAQDNPSHEVTIGMVGKYVDL 317
           DSIYKIPQMLHDQGLD IICEKLGLSP PADLS+WDKLI AQ+NPSHEVTIGMVGKYVDL
Sbjct: 241 DSIYKIPQMLHDQGLDTIICEKLGLSPKPADLSIWDKLIDAQNNPSHEVTIGMVGKYVDL 300

Query: 318 TESYKSLTEALRHAGIHTGSRVNIEYLDSEEIETTGTAVLAKYDAILVPGGFGKRGVEGK 377
           TESYKSLTEALRHAGIHTGSRVNIEYLDSEEIE  GT  L KYDAILVPGGFGKRGVEGK
Sbjct: 301 TESYKSLTEALRHAGIHTGSRVNIEYLDSEEIEANGTDSLDKYDAILVPGGFGKRGVEGK 360

Query: 378 IAAAKFAREHKVPYLGICLGMQVALLEYARNKAGLAQANSTEFDPETEQPVVALIDEWQN 437
           IAAA++ARE+KVPYLGICLGMQVALLEYARNKAGL++ANSTEFDP+TEQPVVALIDEWQN
Sbjct: 361 IAAARYARENKVPYLGICLGMQVALLEYARNKAGLSKANSTEFDPDTEQPVVALIDEWQN 420

Query: 438 HDGKVEKRDANSDLGGTMRLGAQTCDVKPGTLASEIYGAKVTERHRHRYEANNFYLPRVE 497
           HDGKVE+RDANSDLGGTMRLGAQTC VKPGTLA+EIYG  VTERHRHRYEANNFYL RVE
Sbjct: 421 HDGKVERRDANSDLGGTMRLGAQTCAVKPGTLAAEIYGDSVTERHRHRYEANNFYLSRVE 480

Query: 498 EAGLIVSARTPTEDLCEIMELPRTGGENAHPWYLGVQYHPEFKSTPRDGHPLFISYIK 555
           EAG++VSARTPTEDLCEIMELPRT GENAHP+Y+GVQYHPEFKSTPRDGHPLFISYI+
Sbjct: 481 EAGMVVSARTPTEDLCEIMELPRT-GENAHPFYIGVQYHPEFKSTPRDGHPLFISYIR 537


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,722,720
Number of extensions: 73603
Number of successful extensions: 203
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 480
Effective length of database: 1,193,720
Effective search space: 572985600
Effective search space used: 572985600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)