BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0161.p
         (271 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312084|ref|YP_003776176.1| hydrolase [Herbaspirillum serop...   431   e-122

>gi|300312084|ref|YP_003776176.1| hydrolase [Herbaspirillum
           seropedicae SmR1]
          Length = 266

 Score =  431 bits (1109), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/263 (77%), Positives = 235/263 (89%)

Query: 6   TLPILHFAHANSYPAGTYGMFFDQLRMHYDVRALPMHAHNPAYPVDDGWRKLGKELGEEL 65
           +LPILHFAHANSYPAGTYGMFF+QLR HYDVRALP+HAH+P +PVDDGWR L +EL EEL
Sbjct: 2   SLPILHFAHANSYPAGTYGMFFEQLRAHYDVRALPIHAHDPRFPVDDGWRTLARELREEL 61

Query: 66  AQRYSEPVILVGHSMGGILSLLAGRKRPDLVRCVVLLDSPIVAGWRASTLRLLKLLRIES 125
            + Y EPVILVGHSMGGILSL+A RKRP LVRCVVLLDSPIVAGWRA  LRL K+ R +S
Sbjct: 62  ERSYHEPVILVGHSMGGILSLMAARKRPALVRCVVLLDSPIVAGWRAQVLRLTKVFRYDS 121

Query: 126 RHSPSVASSRRRNAWPDMEAAYQHYAAKAMFAAWPERVLRDYVAHGVEPEPSGGVKLRFT 185
           R+SP+ AS+RRR+ WPDMEAAYQHYAAK++FAAWP++VLRDYV HG+ P+  GGV+LRF+
Sbjct: 122 RYSPANASARRRDHWPDMEAAYQHYAAKSVFAAWPQQVLRDYVQHGLVPQAGGGVRLRFS 181

Query: 186 RETETAVYRTIPHHLGALTRRQYPVPVGFVGGIDSVECRLAGLDATQRLVGKHFRQIPGG 245
           RETETAVYRTIPHHLG L R+ YP+P+GFVGGIDSVECR+AGL+AT+RLVG+HFRQIPGG
Sbjct: 182 RETETAVYRTIPHHLGPLVRQPYPLPIGFVGGIDSVECRMAGLEATRRLVGRHFRQIPGG 241

Query: 246 HLFPMEAPEAAAQATHEMIRGLL 268
           HLFPMEAP AAA+ATH MI  LL
Sbjct: 242 HLFPMEAPVAAAEATHAMIGELL 264


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 936,111
Number of extensions: 40244
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,222,130
Effective search space: 228538310
Effective search space used: 228538310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)