BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0158.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312086|ref|YP_003776178.1| Mg-dependent DNase [Herbaspiril...   370   e-104
gi|300311908|ref|YP_003776000.1| Mg-dependent DNase [Herbaspiril...   112   2e-26

>gi|300312086|ref|YP_003776178.1| Mg-dependent DNase [Herbaspirillum
           seropedicae SmR1]
          Length = 268

 Score =  370 bits (951), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/264 (73%), Positives = 221/264 (83%)

Query: 1   MWVDTHCHLDAGEFAGEELAVAEGAAGQGVGMIVVPAVAPFNFDAVARLARQRGNCVYAL 60
           MWVDTHCHLDAGEF      +A+ AA  GV +IV+PA+A  NF  V +LAR+ GN VYAL
Sbjct: 1   MWVDTHCHLDAGEFGERSAILADEAAQAGVRVIVIPAIARANFARVGQLAREVGNAVYAL 60

Query: 61  GIHPLYVPNCDESDLSALRNAVEAALNDKRFVAIGEIGLDFFVPALKEPAMRDKQEHFYR 120
           GIHPLYVP+  ESDL+ LR A+ AAL+D  FV IGEIGLDFFVPALKEP +R+KQE F+ 
Sbjct: 61  GIHPLYVPSSQESDLALLREAIAAALDDPLFVGIGEIGLDFFVPALKEPPLREKQEFFFA 120

Query: 121 EQLKLAREFDLPVLLHVRRSQDIILKYLRRIVVPGGIAHAFNGSFQQAETFIGLGFKLGF 180
           EQLKLAR+F LPVLLHVRRSQDIILK+LRRI VPGGIAHAFNGS QQA TF+ LG  LGF
Sbjct: 121 EQLKLARDFALPVLLHVRRSQDIILKHLRRIRVPGGIAHAFNGSDQQARTFVELGLHLGF 180

Query: 181 GGAMTFPRSLQIRRLAAEVPLEAVVLETDAPDISPAWLHPQRNTPDQIPRIGQVLAELRG 240
           GGAMTFPR+LQIRRLAAE+PL ++VLETDAPDI+PAW HP+ NTPDQIPRIGQVLAELRG
Sbjct: 181 GGAMTFPRALQIRRLAAELPLSSIVLETDAPDIAPAWRHPEINTPDQIPRIGQVLAELRG 240

Query: 241 MDIADVAAATSANAHAVLPRLAAA 264
           +   +VAAAT+ANA A LPRLA++
Sbjct: 241 LPQQEVAAATTANARAALPRLASS 264


>gi|300311908|ref|YP_003776000.1| Mg-dependent DNase [Herbaspirillum
           seropedicae SmR1]
          Length = 259

 Score =  112 bits (281), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 129/259 (49%), Gaps = 15/259 (5%)

Query: 1   MWVDTHCHLDAGEFAGEELAVAEGAAGQGVGMIVVPAVAPFNFDAVARLARQRGNCVYAL 60
           M++D+HCH++  + A     +    A   V   +  +V   +F  V  LA Q  +   ++
Sbjct: 1   MYIDSHCHINFPDLAARLPEIFGKMAENQVSHALCVSVDLPDFPQVLALAEQYPHVYASV 60

Query: 61  GIHPLYVPNCDESDLSALRNAVEAALNDKRFVAIGEIGLDFFVPALKEPAMRDKQEHFYR 120
           G+HP Y    + S    +R A     +  R VAIGE GLD++    +     + Q   +R
Sbjct: 61  GVHPDYEDTPEPSVDELVRLA-----DHPRIVAIGETGLDYY----RLQGDLEWQRERFR 111

Query: 121 EQLKLAREFDLPVLLHVRRSQDIILKYLRRIVVP------GGIAHAFNGSFQQAETFIGL 174
             ++ +R    P+++H R + +  ++ LR            G+ H F  S + A+  I L
Sbjct: 112 THIRASRATGKPLIIHTRAASEDTIRILREEGASPQAGGAAGVMHCFTESQEVADAAIEL 171

Query: 175 GFKLGFGGAMTFPRSLQIRRLAAEVPLEAVVLETDAPDISPAWLHPQRNTPDQIPRIGQV 234
           GF + F G +TF  +  ++++A  +PLE +++ETD+P ++P     + N P  +  +G+ 
Sbjct: 172 GFYISFSGIVTFKSAKDLQQVARAIPLERMLIETDSPYLAPVPFRGKTNEPGYVRHVGEF 231

Query: 235 LAELRGMDIADVAAATSAN 253
           +A+LRG   A+VA  TS N
Sbjct: 232 IADLRGTSAAEVARQTSEN 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 705,824
Number of extensions: 26113
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 2
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)