BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0157.p (390 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum serop... 657 0.0 gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [He... 346 2e-96 gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspir... 86 4e-18 gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desucc... 86 5e-18 >gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum seropedicae SmR1] Length = 395 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 303/390 (77%), Positives = 340/390 (87%) Query: 1 MNTRQWLEQLVAFDTTSRNSNLELITSVRDSLQAQGITPWFAHNKERTKANLFATLPATE 60 MNTRQWLE LVAFDTTSRNSNLELIT+VRDSLQ QG+ W AHNK++TKANLFATLPAT Sbjct: 6 MNTRQWLETLVAFDTTSRNSNLELITTVRDSLQQQGVASWLAHNKDKTKANLFATLPATA 65 Query: 61 GPDAGTIQGGIVLSGHTDVVPVDGQKWDSDPFTLTERDGLLYGRGSCDMKGYIAASLALV 120 GP AG+ +GGIVLSGHTDVVPVDGQKWD+DPF LTE+DG LY RGSCDMKG+IA +LALV Sbjct: 66 GPHAGSTEGGIVLSGHTDVVPVDGQKWDTDPFKLTEKDGALYARGSCDMKGFIATALALV 125 Query: 121 PEFLAMPRSKPLHLAFSYDEEIGCAGAPSMLAELQERGIRPDSCVVGEPTNMQVVVAHKG 180 PE+LAMPR KP+HLAFS+DEEIGC GAP ML E+ +RGI+ D CVVGEPT+M VVVAHKG Sbjct: 126 PEYLAMPRVKPIHLAFSFDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVVVAHKG 185 Query: 181 INAFTCRVHGKSAHSSLTPQGCNAIEYAARLICTIRDFADAYKVNGPYDTLYDVPFSTMT 240 IN F C+VHGKSAHSSLTPQGCNAIE+AARLIC IRDFAD YK NGPYD +DVPFSTMT Sbjct: 186 INVFACKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVPFSTMT 245 Query: 241 TNQIRGGIAINTIPDLCEFTYEFRNLPGMSPDKIQAQVTQYVRDQLLPKMQAEYPDAKID 300 TNQIRGGIA+NTIP+LCEFTYEFRNLPGMS IQAQ+ +Y+ + LLPKM+ E+PDA+++ Sbjct: 246 TNQIRGGIAVNTIPELCEFTYEFRNLPGMSVADIQAQIDKYIAEVLLPKMRTEFPDARVE 305 Query: 301 IGIIAASPALETAEQEAITALVRALTEDNEKRKVAYATEAGLFQQIGIPTIVCGPGDIIQ 360 I A SPALE EQ AIT LVRALT D + RKVAY TEAGLFQQIGIPTIVCGPGDI Sbjct: 306 IDNFAGSPALEAVEQAAITELVRALTGDRQTRKVAYGTEAGLFQQIGIPTIVCGPGDIGN 365 Query: 361 AHKPNEFVAIAQLQRCEEFLRKLGRSLQAA 390 AHKPNEFV +AQ++ CE+FLRKLG+SLQAA Sbjct: 366 AHKPNEFVTLAQMEHCEQFLRKLGKSLQAA 395 >gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 346 bits (888), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 177/382 (46%), Positives = 237/382 (62%), Gaps = 10/382 (2%) Query: 3 TRQWLE---QLVAFDTTSRNSNLELITSVRDSLQAQGITPWFAHNKERTKANLFATLPAT 59 TRQ L+ L+ F+T SR SNL LI VRD L+ G ++ ER KANLFATL Sbjct: 13 TRQTLDILTTLIGFNTVSRESNLGLIEWVRDHLERHGAVTRLTYDAERRKANLFATLG-- 70 Query: 60 EGPDAGTIQGGIVLSGHTDVVPVDGQKWDSDPFTLTERDGLLYGRGSCDMKGYIAASLAL 119 DAG + G V SGHTDVVPV GQKWD+DPF DG L+GRG+CDMKG+IA +A Sbjct: 71 ---DAGPGRFGTVFSGHTDVVPVTGQKWDTDPFVAHVADGKLFGRGACDMKGFIAICMAR 127 Query: 120 VPEFLAMPRSKPLHLAFSYDEEIGCAGAPSMLAELQERGIRPDSCVVGEPTNMQVVVAHK 179 +P PLH +FSYDEE+GC G +LA+LQ+ IRP ++GEPT MQ V+AHK Sbjct: 128 LPAIDLARLHTPLHFSFSYDEEVGCLGVRELLADLQQNDIRPTGVIIGEPTMMQPVIAHK 187 Query: 180 GINAFTCRVHGKSAHSSLTPQGCNAIEYAARLICTIRDFADAYKVNGPYDTLYDVPFSTM 239 G ++ C VHG +AHSS G N+I++AA + IR+ A + +G D +DVP+S++ Sbjct: 188 GKRSYRCSVHGHAAHSSCPHLGINSIDFAAMMQLKIREIALRVRHSGVQDDDFDVPYSSI 247 Query: 240 TTNQIRGGIAINTIPDLCEFTYEFRNLPGMSPDKIQAQVTQYVRDQLLPKMQAEYPDAKI 299 T GG A N IPD EF +E R LPG+ P ++ +V Y ++LP+M+ + +I Sbjct: 248 ATTLTSGGNAPNIIPDKAEFVFEHRFLPGIDPAEVFEEVKAYAEQEILPQMRIDGVQGRI 307 Query: 300 DIGIIAASPALET-AEQEAITALVRALTEDNEKRKVAYATEAGLFQQIGIPTIVCGPGDI 358 + + + P + T A+ +T+ +R L + RKV + TE GLF Q G+P ++CGPGDI Sbjct: 308 EFETLTSYPGMCTPADDPLVTSALRILGSE-RARKVGFGTEGGLFGQAGMPAVICGPGDI 366 Query: 359 IQAHKPNEFVAIAQLQRCEEFL 380 AHKPNEFV + QL RCE F Sbjct: 367 AHAHKPNEFVTLEQLARCERFF 388 >gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspirillum seropedicae SmR1] Length = 414 Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 132/296 (44%), Gaps = 23/296 (7%) Query: 71 IVLSGHTDVVPVDGQKWDSDPFTLTERDGLLYGRGSC----DMKGYIAASLALVPEFLAM 126 + L+ H DVVP G+ W DP+ DG +YGR + D Y+ A+ AL E + Sbjct: 92 LALNAHGDVVP-PGEGWTHDPYGGEIADGRIYGRAAAVSKSDFASYLFATRAL--EAVGA 148 Query: 127 PRSKPLHLAFSYDEEIGCAGAPSMLAELQERGIRPDSCVVGEPTNMQVVVAHKGINAFTC 186 + L F+YDEE G P L E ++ RPD V+ + VV AH F Sbjct: 149 SLRGGVELHFTYDEEFGGLLGPGWLLE--QKLTRPD-YVLAAGFSYNVVTAHNACLQFEI 205 Query: 187 RVHGKSAHSSLTPQGCNAIEYAARLICTIRDFADAYKVNGPYDTLYDVPFSTMTTNQIRG 246 VHG++ H S+ G +A++ A ++ I + + + + TM +I G Sbjct: 206 TVHGRATHGSMPETGHDALQAATAILNAI--YGALPGLKEIRSAIPGITHPTMIVGRIDG 263 Query: 247 GIAINTIPDLCEFTYEFRNLPGMSPDKIQAQVTQYVRDQL--LPKMQAEYPDAKIDIGII 304 G N +P + R +P P +++A V + + D + LP ++ E I ++ Sbjct: 264 GTNTNVVPGKVVLKMDRRMIPEEDPSQVEAGVRKLIEDAVAGLPGIRVE-----IRRLLL 318 Query: 305 AASPALETAEQEAITALVR----ALTEDNEKRKVAYATEAGLFQQIGIPTIVCGPG 356 A + ++ + +L+R + E A T+A L+ + GIP ++ G G Sbjct: 319 ARALRPLPGHEKLVESLLRNAREVMGETLTTNGSALYTDARLYGEQGIPVVLFGAG 374 >gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desuccinylase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 98/339 (28%), Positives = 142/339 (41%), Gaps = 32/339 (9%) Query: 65 GTIQGGIVLSGHTDVVPVDG-QKWDSDPFTLTERDGLLYGRGSCDMKGYIAASLALVPEF 123 GT Q +V +GHTDVVP +KW S PF T R+G LYGRG+ DMK IAA + EF Sbjct: 57 GTAQPLVVFAGHTDVVPTGPLEKWQSHPFQPTLREGRLYGRGASDMKTSIAAMVVACEEF 116 Query: 124 LAMPRSKPLHLAF---SYDEEIGCAGAPSMLAELQERGIRPDSCVVGEPTNMQVV----- 175 A + F S +E G + L+ RG + D C+VGEPT+ + + Sbjct: 117 TAAHPDHKGSIGFLITSDEEGPAIDGTVVVCNALKARGEQLDYCIVGEPTSAKTLGDMIK 176 Query: 176 VAHKGINAFTCRVHGKSAHSSLTPQGCNAIEYAARLICTIRDFADAYKVNGPYDTLYDVP 235 +G + V G H + N I AA + + A+ + Y +P Sbjct: 177 NGRRGTMSGKLTVKGIQGHIAYPQLARNPIHQAAPALAEL--VAEQWDAGNE----YYLP 230 Query: 236 FSTMTTNQIRGGIAINTIPDLCEFTYEFRNLPGMSPDKIQAQVTQYVRDQLLPKMQAEYP 295 S +N G A N IP + FR + + +Q +V +L K EY Sbjct: 231 TSWQISNIHGGTGASNVIPGEVMIDFNFRFSTASTVEGLQQRV-----HAILDKHGLEY- 284 Query: 296 DAKIDIGIIAASPALETAEQEAITALVRALTE----DNEKRKVAYATEAGLFQQIGIPTI 351 D K +G + P L T + AL +A+ + D E ++ QI I Sbjct: 285 DLKWTVGGL---PFL-TPRGDLSDALSKAIKDETGLDTELSTTGGTSDGRFIAQICPQVI 340 Query: 352 VCG-PGDIIQAHKPNEFVAIAQLQRCEEFLRKLGRSLQA 389 G P D I HK +E + + + + RK +L A Sbjct: 341 EFGPPNDSI--HKIDEHIEVRYIDPLKNIYRKTLENLLA 377 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,216,038 Number of extensions: 50564 Number of successful extensions: 152 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 146 Number of HSP's successfully gapped: 4 Length of query: 390 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 303 Effective length of database: 1,207,925 Effective search space: 366001275 Effective search space used: 366001275 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)