BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0156.p (245 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transpo... 382 e-107 gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbasp... 192 2e-50 gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans... 170 1e-43 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 143 1e-35 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 137 1e-33 >gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 382 bits (981), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/228 (83%), Positives = 206/228 (90%) Query: 13 NNMNQHDQAVLSCRGLGKTFMQGKYSVKVLNGVDIDVKPGEQVAIVGVSGSGKSTLLHLL 72 N+ ++ QAVL+ RGLGKTF QGKYSVKVL VDIDV GEQVAIVG SGSGKSTLLHLL Sbjct: 2 NDPLKNRQAVLAARGLGKTFTQGKYSVKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLL 61 Query: 73 GGLDTPSAGSVTLMGKDFANLGETARGDLRNAALGFVYQFHHLLPEFSALDNVAMPLMIR 132 GGLDTPS+G+V+L+GKDFA+LGE+ RG LRN +LGFVYQFHHLLPEFSALDNVAMPLMIR Sbjct: 62 GGLDTPSSGTVSLLGKDFASLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIR 121 Query: 133 RVKRDQAQEQARTILARVGLENRVRHVPGELSGGERQRVALARALVTNPACVLADEPTGN 192 RVKR AQEQAR +L +VGL RV HVPGELSGGERQRVALARALVT+PACVLADEPTGN Sbjct: 122 RVKRADAQEQAREMLGKVGLAQRVTHVPGELSGGERQRVALARALVTHPACVLADEPTGN 181 Query: 193 LDRSTADKTFELMIELSQTLGTAFVIVTHDIELARRCGRVLRLSENGL 240 LDRSTAD+TFELMIELS+TLGTAFVIVTHDIELA RCGRVLRLSE GL Sbjct: 182 LDRSTADRTFELMIELSRTLGTAFVIVTHDIELAGRCGRVLRLSEQGL 229 >gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 192 bits (489), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 104/198 (52%), Positives = 134/198 (67%), Gaps = 2/198 (1%) Query: 39 VKVLNGVDIDVKPGEQVAIVGVSGSGKSTLLHLLGGLDTPSAGSVTLMGKDFANLGETAR 98 + +L+G+D V G +AIVG SGSGKSTLL LL GLDTPS GSV L G+D L E R Sbjct: 34 LTILDGIDFTVAAGTTLAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDEDGR 93 Query: 99 GDLRNAALGFVYQFHHLLPEFSALDNVAMPLMIRRVKRDQAQEQARTILARVGLENRVRH 158 LR LGFV+Q LL +AL+NV +PL +R R A+E+A +L RVGL +R++H Sbjct: 94 ALLRKRKLGFVFQSFQLLGHLNALENVMLPLELRGDAR--AREKATEMLGRVGLGSRLKH 151 Query: 159 VPGELSGGERQRVALARALVTNPACVLADEPTGNLDRSTADKTFELMIELSQTLGTAFVI 218 P LSGGE+QRVALARA VT P +LADEPTG+LD +T + ELM EL++ G+ V+ Sbjct: 152 SPKYLSGGEQQRVALARAFVTEPPLLLADEPTGSLDAATGEAVIELMFELNRERGSTLVL 211 Query: 219 VTHDIELARRCGRVLRLS 236 VTHD +A RC R + ++ Sbjct: 212 VTHDNAMAARCQRTITIA 229 >gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 657 Score = 170 bits (430), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 90/216 (41%), Positives = 135/216 (62%), Gaps = 1/216 (0%) Query: 22 VLSCRGLGKTFMQGKYSVKVLNGVDIDVKPGEQVAIVGVSGSGKSTLLHLLGGLDTPSAG 81 +L RGL + F G + VLN V++D+ GE VAIVG SGSGKSTL+++LG LD PSAG Sbjct: 5 LLQLRGLRRDFPAGDEKITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDKPSAG 64 Query: 82 SVTLMGKDFANLGETARGDLRNAALGFVYQFHHLLPEFSALDNVAMPLMIRRVKRDQAQE 141 S + G++ L LR GF++Q +HLL + A NV +P + ++ Q ++ Sbjct: 65 SYLVAGRETGKLDADELAQLRREHFGFIFQRYHLLSDLDATANVEVPSVYAGLEPLQRRQ 124 Query: 142 QARTILARVGLENRVRHVPGELSGGERQRVALARALVTNPACVLADEPTGNLDRSTADKT 201 +A +LAR+GL R H PG+LSGG++QRV++ARAL+ +LADEPTG LD + + Sbjct: 125 RAGELLARLGLAERSHHKPGQLSGGQQQRVSIARALMNGGDVILADEPTGALDSHSGQEV 184 Query: 202 FELMIELSQTLGTAFVIVTHDIELARRCGRVLRLSE 237 +++ EL G +IVTHD+++A R++ + + Sbjct: 185 IKILKEL-HAEGHTIIIVTHDMQVASHAQRIIEIKD 219 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 143 bits (361), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 77/216 (35%), Positives = 127/216 (58%), Gaps = 2/216 (0%) Query: 23 LSCRGLGKTFMQGKYSVKVLNGVDIDVKPGEQVAIVGVSGSGKSTLLHLLGGLDTPSAGS 82 ++ RG+GKT++ V+ L +D+++ PG I+G SG+GKS+LL + L+ P++G Sbjct: 39 VALRGVGKTYVSAAGPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGR 98 Query: 83 VTLMGKDFANLGETARGDLRNAALGFVYQFHHLLPEFSALDNVAMPLMIRRVKRDQAQEQ 142 V + D A L ET LR +G ++Q +LL + DN+A+PL + V R Q ++ Sbjct: 99 VEVDDVDLATLDETQLVALRRR-IGMIFQHFNLLAAKTVFDNIALPLRVAGVPRAQITQR 157 Query: 143 ARTILARVGLENRVRHVPGELSGGERQRVALARALVTNPACVLADEPTGNLDRSTADKTF 202 +LA VGL+++ P LSGG++QRV +ARAL + P +L DE T LD T Sbjct: 158 VHELLALVGLQDKADSYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSIL 217 Query: 203 ELMIELSQTLGTAFVIVTHDIELARRCG-RVLRLSE 237 +L+ ++++ LG +++TH++ + R RVL L + Sbjct: 218 QLLRDINRKLGITIILITHEMSVIREIADRVLVLEQ 253 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 137 bits (344), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 127/220 (57%), Gaps = 7/220 (3%) Query: 21 AVLSCRGLGKTFMQGKYSVKVLNGVDIDVKPGEQVAIVGVSGSGKSTLLHLLGGLDTPSA 80 A++ + L K+F S KVLNGV +DV+ G+ VAI+G SGSGKSTLL L GL+ A Sbjct: 3 AIVKIKDLHKSF----GSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDA 58 Query: 81 GSVTLMGKDFANLGETARGDLRNAALGFVYQFHHLLPEFSALDNVAMPL-MIRRVKRDQA 139 G + + G D + + +LR +G V+Q ++L P + N+ + L I+++ +QA Sbjct: 59 GDIQVCGHDIHHPDKLNLRELRK-QVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQA 117 Query: 140 QEQARTILARVGLENRVRHVPGELSGGERQRVALARALVTNPACVLADEPTGNLDRSTAD 199 + A +L VGLEN+ P +LSGG+ QRVA+AR+L P +L DE T LD Sbjct: 118 KTIAHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTA 177 Query: 200 KTFELMIELSQTLGTAFVIVTHDIELARRCGRVLRLSENG 239 + ++M +L++ G V+VTH++ AR+ VL G Sbjct: 178 EVLKVMEDLARG-GMTMVLVTHEMAFARKLADVLVFMHQG 216 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 693,474 Number of extensions: 29119 Number of successful extensions: 450 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 277 Number of HSP's successfully gapped: 145 Length of query: 245 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 162 Effective length of database: 1,226,865 Effective search space: 198752130 Effective search space used: 198752130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)