BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0153.p
         (235 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312089|ref|YP_003776181.1| lipoprotein release ABC transpo...   303   8e-84
gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodies...    60   2e-10

>gi|300312089|ref|YP_003776181.1| lipoprotein release ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 421

 Score =  303 bits (776), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 147/167 (88%), Positives = 157/167 (94%)

Query: 20  LSLIKNLPFEWLVGIRYTRAGKRSGRNSFISFISLISMAGIGLGVAALIVVLSVMNGFQK 79
           +SLIKNLPFEWLVGIRYTRAGKRSGRNSFISFISLISMAGI LGVAALIVVLSVMNGFQK
Sbjct: 1   MSLIKNLPFEWLVGIRYTRAGKRSGRNSFISFISLISMAGIALGVAALIVVLSVMNGFQK 60

Query: 80  EVRDRMLSVLSHIEVFDASGAMPDWQAVAKQTFQNKEVIGAAPYVAAQAMMTRDDNVRGV 139
           EVRDRMLSVL+HIEVFDASG+M DWQAVAKQTFQN EV+GAAPYVAAQAMMTRDD+VRGV
Sbjct: 61  EVRDRMLSVLAHIEVFDASGSMKDWQAVAKQTFQNPEVLGAAPYVAAQAMMTRDDSVRGV 120

Query: 140 VIRGVLPAEEPKVSDVAGQVRQGKFSDLKPGEFNIVLGGELARSLHL 186
           ++RGVLP EEPKVSDVA QV+QG F  LKPGEFNIV+GGELAR L +
Sbjct: 121 LVRGVLPQEEPKVSDVAKQVKQGSFDSLKPGEFNIVIGGELARGLRV 167


>gi|300312904|ref|YP_003776996.1| diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor domains
           protein [Herbaspirillum seropedicae SmR1]
          Length = 701

 Score = 59.7 bits (143), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 180 LARSLHLEVLAEGVEDLTQYDIMKENGCDKVQGYYFSKPLAV 221
           LA  L+L V+AEGVED  Q+  +KEN CD+VQGYYF KP+ V
Sbjct: 640 LAHILNLRVIAEGVEDEEQHAFLKENACDEVQGYYFGKPMEV 681


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 733,824
Number of extensions: 30321
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 235
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 153
Effective length of database: 1,231,600
Effective search space: 188434800
Effective search space used: 188434800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)