BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0151.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312091|ref|YP_003776183.1| signal peptide protein [Herbasp...   261   2e-71

>gi|300312091|ref|YP_003776183.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score =  261 bits (668), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 144/238 (60%), Positives = 172/238 (72%), Gaps = 3/238 (1%)

Query: 1   VLTDIGQLDLEEAESRRLFNSALPLFEEIGRTLLYVDAATWLLRADDWAGLRTSSPQAAS 60
           VLTDIGQL LEEAESRRLF++ALPLF EIG  L+Y DA TW +RAD WAGLRTS+P AAS
Sbjct: 108 VLTDIGQLQLEEAESRRLFDAALPLFTEIGHALVYGDARTWFIRADAWAGLRTSTPSAAS 167

Query: 61  GRNIDIWMPEGPGELAWRKLQNEVQMQWFSEAINDEREMHGKKPVNSLWIWGGAAAASTV 120
           GRN+DIWMPEGPGELAWRKLQNEVQMQWF+EA+N++REM G+K +NS+WIWGG A A  +
Sbjct: 168 GRNVDIWMPEGPGELAWRKLQNEVQMQWFAEALNEQREMRGQKAINSIWIWGG-ADAGVL 226

Query: 121 PTTIYQASFNLSGWPQALTATAQHSSAPDGVLAAPGEHGLLLLSDLLEPGLTDEWGYWLQ 180
               Y ASF L GW +A     +H ++    L     H LL+L  L E  L +EWG WLQ
Sbjct: 227 AQQRYAASFGLRGWMRAF--GDEHPASDPTQLGQSSGHRLLVLDALAEAALAEEWGLWLQ 284

Query: 181 RMEALDKLWFAPLLQAVRSKRLATLSLVFTGQDKLQHVTVTASSLRRFWSKPSLAKLA 238
            +E LD+ W APLL ++R+  L  L LV TG D+   V VT  +LRRFW KPSLA L+
Sbjct: 285 HLEHLDRDWLAPLLVSLRAGTLEALHLVLTGADRSIAVDVTRGALRRFWRKPSLAGLS 342


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 772,075
Number of extensions: 30872
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)