BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0149.p
         (455 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312611|ref|YP_003776703.1| TRAP-type uncharacterized trans...   257   1e-69

>gi|300312611|ref|YP_003776703.1| TRAP-type uncharacterized
           transport system periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 463

 Score =  257 bits (656), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 149/427 (34%), Positives = 240/427 (56%), Gaps = 22/427 (5%)

Query: 30  LVLLAVCWIVLAMLKPATQGKIVMTAGAEGGIYHNYAQRYAQILKRDGITLDIRTSSGSV 89
           L++L   W+V+ +++PA    I + AG +   +   A+RY  IL RDGI LDI  + GS+
Sbjct: 38  LLILVGAWLVIWLIRPAPPSSITIAAGPKDSNFWRVAERYKTILARDGIKLDIVETGGSL 97

Query: 90  ENFQRLREDDSEFQVGFIQSGTGNGEQAPGIQTI---AAISYEPIWVFYQGNAT------ 140
           +N +RL + D +  VGF+Q G      A  + ++    +ISY P+ V+Y+  +       
Sbjct: 98  DNLKRLVDSDQDIDVGFVQGGLAGAVPADAMGSLVSLGSISYVPVSVYYRSASINAEGKP 157

Query: 141 ---YDRLSQLRGKRISLGLPGSGLRIVANDLLTENGITTNNST-LEELSGNKAYEQLLNN 196
                +LS+L GKRI++G  GSG  ++A  LL  NG+    +T L  + G++A + L + 
Sbjct: 158 IPPLRQLSELAGKRIAIGGQGSGSSVLAATLLKANGVEAGGATQLLNIGGDEAAQALTSG 217

Query: 197 KIDAAFFIGRADSQLIHT----LLNSGMKLMSFSQADALVQKFPSLSKITYPRGATSLIN 252
           KIDAAF +G  DS  + T    L   G++L+ FSQA+A V++F  L+ +  P G   L  
Sbjct: 218 KIDAAFLMG--DSVSVATMGKLLRAPGVRLLDFSQAEAYVRRFRYLNTLKMPMGVFDLAR 275

Query: 253 DRPSHDVTLLAATAMLVSKESLHPALAYLLLDAANVIHTAPDFFTPRNYFPNQNIEDFNI 312
           + P+ D  L+A TA LV++E LHPAL+ LL++AA+ +H   +       FP     ++ I
Sbjct: 276 NLPARDTQLIAPTAELVAREDLHPALSDLLIEAAHEVHGKANVMQKAGEFPAPLEHEYRI 335

Query: 313 SDETRRYFRSGRPFLQRYLPFWLANFIERRFTILLPFIAVLFGLIQAVPRIYEASMKKRL 372
           SD+  RY++SG+ F  R LPFWLA+ ++R   I+LP I +L   I+ VP +Y   ++ R+
Sbjct: 336 SDDAARYYKSGKTFFYRTLPFWLASLLDRAVVIVLPVILLLIPGIRLVPMLYGWRVRSRI 395

Query: 373 VVWYKEIHLLEEEIWNTQEPSDEKLAEWHAEIEEIDANANQIDIPQRYYGDVYALKQAIR 432
             WY E+  LE  I      S ++ A+    ++EI+   N++ +P  +    Y L++ I 
Sbjct: 396 YRWYGELIALERGI---SRDSPQEQADILKRLDEIEMAVNRMKMPLAFADQFYVLREHIG 452

Query: 433 VVRDRVS 439
            VR R++
Sbjct: 453 FVRARLA 459


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,398,752
Number of extensions: 58684
Number of successful extensions: 176
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 367
Effective length of database: 1,203,190
Effective search space: 441570730
Effective search space used: 441570730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)