BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0146.p
         (310 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312094|ref|YP_003776186.1| hypothetical protein Hsero_2783...   333   7e-93

>gi|300312094|ref|YP_003776186.1| hypothetical protein Hsero_2783
           [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score =  333 bits (855), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 156/202 (77%), Positives = 177/202 (87%)

Query: 109 MGQSDTNRVATLAMRANLESLYLLMDKLYRRNPGEWKKTGASREEVVRRVREAVEKRQTW 168
           MGQSDTNRVATLAMRANL+SLYLLM KLYRRNP EWKKT A+REE  ++VR+A+E+RQ W
Sbjct: 1   MGQSDTNRVATLAMRANLDSLYLLMSKLYRRNPAEWKKTAATREEAEKKVRQAIEERQAW 60

Query: 169 DDLQGKHDIAAMSLALSPDFKADRVAAFIYATADMIVTAHGGKIEFFLIDGLDAQYLYNA 228
            +LQGK DI AM+LALS +FK DRVAAFI ATADMI+ AH  KIEFFL+DGLDAQ+LYNA
Sbjct: 61  PELQGKRDIQAMTLALSSEFKGDRVAAFIDATADMIIVAHDNKIEFFLVDGLDAQHLYNA 120

Query: 229 ARNIETAVWMLSNRRNTTGQPLLLSDEINAAERNLSFEREFGKIIGRLDLLAEFITEKYR 288
           ARN+E A W+L++RR   G PLLLSDEI    RNLSFEREFGKI+GRLDL+AEF+TE+YR
Sbjct: 121 ARNVEIAAWILASRRTAAGAPLLLSDEIGEQARNLSFEREFGKIVGRLDLMAEFMTERYR 180

Query: 289 RAGISYVQNLLGGSFLQFLPVR 310
           RAGISYVQNLLGGSFLQFLPVR
Sbjct: 181 RAGISYVQNLLGGSFLQFLPVR 202


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 832,609
Number of extensions: 29103
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,217,395
Effective search space: 273913875
Effective search space used: 273913875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)