BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0145.p
         (651 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312095|ref|YP_003776187.1| alkaline phosphatase [Herbaspir...  1074   0.0  

>gi|300312095|ref|YP_003776187.1| alkaline phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 651

 Score = 1074 bits (2778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/629 (81%), Positives = 563/629 (89%), Gaps = 2/629 (0%)

Query: 19  QPKRRELLKVFAAAPLLPLTLSASGMLAGCATASNRSG--FASASFSGMAAPSLANPSAM 76
           Q  RR LLK   AAPLLPLT   S      A A+  +G  FASA F+GM AP+LANP+AM
Sbjct: 17  QAGRRSLLKALGAAPLLPLTGGLSASALLAACATPGAGKPFASARFTGMPAPTLANPAAM 76

Query: 77  ATTTVASSLDVVFRDGVKQSYQLTYQPFFVTGDMVPDGKGGKLLAGGYYDINNQPIIDRS 136
           A+TTV S+L+V F DG KQSY+L YQPFF+TGDMVPDGKGG +LAGGY DINNQPIIDRS
Sbjct: 77  ASTTVGSALEVTFADGSKQSYKLAYQPFFMTGDMVPDGKGGTILAGGYLDINNQPIIDRS 136

Query: 137 VPGKERHFFSDCPDGSSLLTLKGAQVAGVRGNTVFAVVQFEYTTRDQKQAAMYGQLPSPI 196
           VPGKER FFSDCPDGSSLLT+ GA+V GV+GN VFAVVQFEYTTRDQKQAAMYGQLPSPI
Sbjct: 137 VPGKERQFFSDCPDGSSLLTVAGAKVPGVKGNAVFAVVQFEYTTRDQKQAAMYGQLPSPI 196

Query: 197 AVLTLDQDPATGKLSLVKYHNVDTSSVNGLWITCGASLSPWNTHLSSEEYEPDAAAIAGN 256
           AVLTLDQDP++GKLSLVKYHNVDTS VNGLWITCGASLSPWNTHLSSEEYEPDA+AIA N
Sbjct: 197 AVLTLDQDPSSGKLSLVKYHNVDTSQVNGLWITCGASLSPWNTHLSSEEYEPDASAIASN 256

Query: 257 VQFQAFSKNLFGDAARANPYHYGHLPEITVHADGSGSVVKHYCLGRISHELVQVMPDRRT 316
            QF+AFSKNL+GD +RANPYHYGHLPE+TV+ DG+GS+ KHYCLGRISHELVQVMPD+RT
Sbjct: 257 PQFKAFSKNLYGDESRANPYHYGHLPEVTVNPDGTGSIKKHYCLGRISHELVQVMPDQRT 316

Query: 317 VLMGDDATNGGLFMFIADREADLSAGTLYVATWTQTSGIGPGAGTLGWVRLGHATSAEIK 376
           VLMGDDATNGGLFMFIADR ADLS+GTLYVA W Q SG+GPGAG L WVRLG ATSAEIK
Sbjct: 317 VLMGDDATNGGLFMFIADRAADLSSGTLYVARWEQVSGVGPGAGKLSWVRLGSATSAEIK 376

Query: 377 ALADKLKAVDIMDVKTSDPQDASYTKIPFNGKANWVKLKPGMEQAAAFLETHRYAALKGG 436
           A+AD+ KAVDIMD++TSDP DAS++KIPFNGK NWV++KPGM++AAAFLETHRYAAL GG
Sbjct: 377 AMADRYKAVDIMDIRTSDPADASFSKIPFNGKFNWVRVKPGMQKAAAFLETHRYAALAGG 436

Query: 437 SLGFTKMEGTTVNARDKIAYSAMSYVQTSMLDGSGGIKVQGPKAGAVYALNMKGGRNDVS 496
           SLGFTKMEGTTVNARDKIAYSAMSYVQTSML+GSG IKV+GPKAGAVYALN++GG+ D  
Sbjct: 437 SLGFTKMEGTTVNARDKIAYSAMSYVQTSMLNGSGHIKVEGPKAGAVYALNLRGGQRDAG 496

Query: 497 GQAIDSAWVPVDMAPPAALVGEDLKQADALGNLAHADKIANPDNIKFSEKLRTLFIGEDS 556
           G AIDS WV +DMAPPAALVG DLK  DALGNLA  + IANPDNIKFSEKLRTLFIGEDS
Sbjct: 497 GNAIDSEWVAIDMAPPAALVGVDLKTPDALGNLADQEHIANPDNIKFSEKLRTLFIGEDS 556

Query: 557 GMHVNNFLWAYNVDTKQLSRILSCPAGAESTGLHAVDEINGWTYVMSNFQHAGDWEKPLH 616
           GMHVNNFLWAYNVDTK L+R+LSCPAGAESTGLHAVDEINGWTYVMSNFQHAGDWEK LH
Sbjct: 557 GMHVNNFLWAYNVDTKALTRVLSCPAGAESTGLHAVDEINGWTYVMSNFQHAGDWEKGLH 616

Query: 617 DKVKEVLDPLVRANYKDRFGATVGYLTGM 645
           DKVK+ LDPLVRANYKDRFGATVGYLTG+
Sbjct: 617 DKVKDTLDPLVRANYKDRFGATVGYLTGL 645


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,972,893
Number of extensions: 81365
Number of successful extensions: 233
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 560
Effective length of database: 1,188,985
Effective search space: 665831600
Effective search space used: 665831600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)