BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0139.p (336 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPas... 481 e-137 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 301 5e-83 gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 298 5e-82 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 188 5e-49 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 182 3e-47 >gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 336 Score = 481 bits (1237), Expect = e-137, Method: Compositional matrix adjust. Identities = 234/336 (69%), Positives = 272/336 (80%) Query: 1 VIRIEHLHKTYQVANRDLIALTDINLQIEAGEIFGVIGRSGAGKSTLIRTLNLLERPSSG 60 +IRIE LHKTY+ RD+IAL DINL I GE+FG+IGRSGAGKSTLIRTLN+LERP SG Sbjct: 1 MIRIEQLHKTYRAGQRDIIALRDINLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSG 60 Query: 61 SIFIEDEDITRFDNAQLHALRQRVGMIFQHFNLLNAKTVAANIDWPLKITGKYTREQRAA 120 + I+ EDIT + L LRQRVGM+FQHFNLLNAKTVA NIDWPLKITG+Y+RE+RAA Sbjct: 61 RVLIDGEDITGLGHEALLGLRQRVGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAA 120 Query: 121 RVTELLELVGLTGHRDNYPAQLSGGQKQRVGIARALANYPHLLLCDEATSALDPETTQAI 180 RV ELL+LVGL HRD YP+QLSGGQKQRVGIARALAN+P LLLCDEATSALDPETTQ+I Sbjct: 121 RVDELLQLVGLDAHRDQYPSQLSGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSI 180 Query: 181 LRLLLDINRKLGLTIVLITHEMQVIRSICDRVAVIDDSRIVESGKVADVFLHPQHAATQK 240 LRLLL+INRKLGLTIVLITHEM+VIRSICDRVAV+D + E G+V D+FL PQHA T+ Sbjct: 181 LRLLLEINRKLGLTIVLITHEMEVIRSICDRVAVLDGGAVAEQGRVVDIFLRPQHAVTRS 240 Query: 241 LVAESHTFEQQDGIGLEHIKGKLVRLTFVGDITYQPILTNITAATQALITILQGTISRIK 300 L+ +SH ++ + + GKLVRLT+ GDI QPIL+ +TAAT AL TI++GT+SRIK Sbjct: 241 LLTQSHAWDAGESLYQRRPDGKLVRLTYAGDIAAQPILSQLTAATSALATIVRGTVSRIK 300 Query: 301 DTPYGQLLVELNGSDDDLAKVFAHFDRYQIHHEVLA 336 DTPYGQLLVE +G D LA+V I HEVLA Sbjct: 301 DTPYGQLLVEFSGDADALAQVLDRLQTSDIEHEVLA 336 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 301 bits (771), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 167/307 (54%), Positives = 210/307 (68%), Gaps = 7/307 (2%) Query: 9 KTYQVANRDLIALTDINLQIEAGEIFGVIGRSGAGKSTLIRTLNLLERPSSGSIFIEDED 68 KTY A + AL DI+L+I G IFG+IGRSGAGKS+L+RT+N LERP+SG + ++D D Sbjct: 46 KTYVSAAGPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVD 105 Query: 69 ITRFDNAQLHALRQRVGMIFQHFNLLNAKTVAANIDWPLKITGKYTREQRAARVTELLEL 128 + D QL ALR+R+GMIFQHFNLL AKTV NI PL++ G R Q RV ELL L Sbjct: 106 LATLDETQLVALRRRIGMIFQHFNLLAAKTVFDNIALPLRVAG-VPRAQITQRVHELLAL 164 Query: 129 VGLTGHRDNYPAQLSGGQKQRVGIARALANYPHLLLCDEATSALDPETTQAILRLLLDIN 188 VGL D+YP +LSGGQKQRVGIARALA+ P +LLCDEATSALDPETTQ+IL+LL DIN Sbjct: 165 VGLQDKADSYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDIN 224 Query: 189 RKLGLTIVLITHEMQVIRSICDRVAVIDDSRIVESGKVADVFLHPQHAATQKLVAE-SHT 247 RKLG+TI+LITHEM VIR I DRV V++ R+ E G+V VF PQHAAT+ L+A H Sbjct: 225 RKLGITIILITHEMSVIREIADRVLVLEQGRVAELGEVWQVFGKPQHAATRALLAPLQHG 284 Query: 248 FEQ--QDGIGLEHIKG---KLVRLTFVGDITYQPILTNITAATQALITILQGTISRIKDT 302 Q Q + + G ++++L F G QP L I A + +LQ + I+ Sbjct: 285 LPQELQQALQPQAPAGRHERVLQLEFHGGDGLQPDLQRIAAVLGGRVRVLQAGVDHIQGH 344 Query: 303 PYGQLLV 309 +GQL++ Sbjct: 345 THGQLVL 351 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 298 bits (763), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 158/321 (49%), Positives = 211/321 (65%), Gaps = 20/321 (6%) Query: 20 ALTDINLQIEAGEIFGVIGRSGAGKSTLIRTLNLLERPSSGSIFIEDEDITRFDNAQLHA 79 A+ ++L I GEIFG+IGRSGAGKSTL+RTLNLL RP+SG I ++ +D+T AQL Sbjct: 16 AVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQDLTSLSAAQLRE 75 Query: 80 LRQRVGMIFQHFNLLNAKTVAANIDWPLKITGKYTREQRAARVTELLELVGLTGHRDNYP 139 R+ +GMIFQHFNLL++++V NI PL++ GK ++ + AA+V LLELVGLT RD YP Sbjct: 76 ARRGIGMIFQHFNLLSSRSVYDNIALPLELAGK-SKAEIAAKVEPLLELVGLTALRDRYP 134 Query: 140 AQLSGGQKQRVGIARALANYPHLLLCDEATSALDPETTQAILRLLLDINRKLGLTIVLIT 199 AQ+SGGQKQRVGIARALAN P +LL DEATSALDPETT++IL LL IN++LGLTIVLIT Sbjct: 135 AQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLRKINKELGLTIVLIT 194 Query: 200 HEMQVIRSICDRVAVIDDSRIVESGKVADVFLHPQHAATQKLVAESHTFEQQDGI----- 254 H+M+VI+ ICDRVAV++ +++E G+V DVF P+H T+ L+ + E G+ Sbjct: 195 HQMEVIKQICDRVAVMEAGQVIEQGEVLDVFRQPRHEVTRALIGDVIAHELPKGVLARLR 254 Query: 255 ----------GLEHIKGKLVRLTFVGDITYQPILTNITAATQALITILQGTISRIKDTPY 304 G +H L R F G+ QP L+ IL G I I+ + Sbjct: 255 ERLARADAGQGTDH----LFRFAFTGNDVDQPHLSEAVRRFNLDFNILHGQIDEIQGQAF 310 Query: 305 GQLLVELNGSDDDLAKVFAHF 325 G L + NG+ D++ + + Sbjct: 311 GSLAILANGTQDNINQAMQYL 331 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 188 bits (477), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 101/243 (41%), Positives = 151/243 (62%), Gaps = 5/243 (2%) Query: 1 VIRIEHLHKTYQVANRDLIALTDINLQIEAGEIFGVIGRSGAGKSTLIRTLNLLERPSSG 60 +++I+ LHK++ +N+ L ++L ++ G++ +IG+SG+GKSTL+R LN LE+ +G Sbjct: 4 IVKIKDLHKSFG-SNK---VLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAG 59 Query: 61 SIFIEDEDITRFDNAQLHALRQRVGMIFQHFNLLNAKTVAANIDWPLKITGKYTREQRAA 120 I + DI D L LR++VG++FQ +NL TV NI L K + EQ Sbjct: 60 DIQVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKT 119 Query: 121 RVTELLELVGLTGHRDNYPAQLSGGQKQRVGIARALANYPHLLLCDEATSALDPETTQAI 180 ++L+LVGL +D YP QLSGGQ QRV IAR+LA P L+L DE TSALDPE T + Sbjct: 120 IAHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEV 179 Query: 181 LRLLLDINRKLGLTIVLITHEMQVIRSICDRVAVIDDSRIVESGKVADVFLHPQHAATQK 240 L+++ D+ R G+T+VL+THEM R + D + + ++ E G ++F HP+ A QK Sbjct: 180 LKVMEDLARG-GMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQK 238 Query: 241 LVA 243 V+ Sbjct: 239 FVS 241 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 182 bits (462), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 99/223 (44%), Positives = 135/223 (60%), Gaps = 4/223 (1%) Query: 21 LTDINLQIEAGEIFGVIGRSGAGKSTLIRTLNLLERPSSGSIFIEDEDITRFDNAQLHAL 80 L D++L + GE+ +IG SG+GKST++R +N LE G I I+ + + R D +H L Sbjct: 17 LKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILIDGQRVDR-DGPDIHRL 75 Query: 81 RQRVGMIFQHFNLLNAKTVAANI-DWPLKITGKYTREQRAARVTELLELVGLTGHRDNYP 139 R RVGM+FQ FNL +TV N+ + P+ + G R Q + LL+ VGL D YP Sbjct: 76 RTRVGMVFQRFNLFPHRTVLENVTEGPIYVNG-LARAQARSEAMSLLDKVGLAARCDAYP 134 Query: 140 AQLSGGQKQRVGIARALANYPHLLLCDEATSALDPETTQAILRLLLDINRKLGLTIVLIT 199 AQLSGGQ+QRV IAR+LA P +L DE TSALDPE +L ++ + G+T++++T Sbjct: 135 AQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMRTLAAD-GMTMIVVT 193 Query: 200 HEMQVIRSICDRVAVIDDSRIVESGKVADVFLHPQHAATQKLV 242 HEM R + DRV + IVESG A V PQHA TQ + Sbjct: 194 HEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDFL 236 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 982,506 Number of extensions: 39765 Number of successful extensions: 517 Number of sequences better than 1.0e-08: 135 Number of HSP's gapped: 309 Number of HSP's successfully gapped: 149 Length of query: 336 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 250 Effective length of database: 1,212,660 Effective search space: 303165000 Effective search space used: 303165000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)