BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0138.p (220 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310888|ref|YP_003774980.1| metal ion ABC transporter perme... 303 9e-84 gi|300310326|ref|YP_003774418.1| metal ion ABC transporter perme... 167 9e-43 gi|300311639|ref|YP_003775731.1| metal ion ABC transporter perme... 150 5e-38 >gi|300310888|ref|YP_003774980.1| metal ion ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 229 Score = 303 bits (775), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 189/219 (86%), Positives = 204/219 (93%) Query: 2 IDFSVIDWGDIGQATLETLAMTGLSLFFTVLIGLPLGILLFLTARKQLLAQRGVYVALSL 61 ID SVIDWG++G ATLETLAMTG SLFFTVL+GLPLGILLFLT R+QLL QRG+Y+ LSL Sbjct: 11 IDLSVIDWGEVGDATLETLAMTGGSLFFTVLLGLPLGILLFLTNRRQLLEQRGLYLVLSL 70 Query: 62 VVNVLRSVPFLILLIVMIPVTLLLVGTSLGVEGSIPPLVIGTAPFFARLVENVLRDIDRG 121 VVNVLRSVPFLILLI++IP TL LVGTSLGV G+IPPLVIGTAPFFARL E+VLR+IDRG Sbjct: 71 VVNVLRSVPFLILLIMLIPFTLWLVGTSLGVTGAIPPLVIGTAPFFARLTESVLREIDRG 130 Query: 122 VLEACQAMGASTHQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAIR 181 +LEAC AMGA QIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAIR Sbjct: 131 ILEACTAMGARRRQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAIR 190 Query: 182 FGYQRFQTEVMIVTVAVLVVLVQLLQFFGDRLVLYFTRK 220 +GYQRFQTEVM+VTVA+LVVLVQLLQFFGDRLVL FTRK Sbjct: 191 YGYQRFQTEVMVVTVAILVVLVQLLQFFGDRLVLRFTRK 229 >gi|300310326|ref|YP_003774418.1| metal ion ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 217 Score = 167 bits (422), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 108/220 (49%), Positives = 145/220 (65%), Gaps = 7/220 (3%) Query: 1 MIDFSVIDWGDIGQATLETLAMTGLSLFFTVLIGLPLGILLFLTARKQLLAQRGVYVALS 60 +ID V +G ETL M +S L+G+PLGI L +T K +L Sbjct: 5 LIDLFVSSFG-------ETLMMVVISGVVGSLLGIPLGIALHITEAKGVLPNVAFNRIAG 57 Query: 61 LVVNVLRSVPFLILLIVMIPVTLLLVGTSLGVEGSIPPLVIGTAPFFARLVENVLRDIDR 120 L+VN +RS PF+ILL+ +IP+T VGTS+G +I PL I APF ARLVE LR++D Sbjct: 58 LLVNAVRSTPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDH 117 Query: 121 GVLEACQAMGASTHQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAI 180 G++EA QAMGA+T QII+ L+PEA G++A +TIT ++L+ Y+AM+G IGGGGLGDL I Sbjct: 118 GLVEAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGI 177 Query: 181 RFGYQRFQTEVMIVTVAVLVVLVQLLQFFGDRLVLYFTRK 220 R+GYQRF EVM+ V +L+V VQL+Q GD LV + + Sbjct: 178 RYGYQRFLPEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR 217 >gi|300311639|ref|YP_003775731.1| metal ion ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 199 Score = 150 bits (380), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 89/193 (46%), Positives = 132/193 (68%) Query: 22 MTGLSLFFTVLIGLPLGILLFLTARKQLLAQRGVYVALSLVVNVLRSVPFLILLIVMIPV 81 M +S ++ G+PL +LL ++A L ++ L V+N R+ PF++LL+ +IP+ Sbjct: 1 MVSVSGALALVAGVPLAVLLIVSAPGGFLDWPRLHRVLGSVINGFRATPFIVLLVALIPL 60 Query: 82 TLLLVGTSLGVEGSIPPLVIGTAPFFARLVENVLRDIDRGVLEACQAMGASTHQIIFGAL 141 T L+ GT++GV +I PL I PFFAR+VE LR++D G++EA QA+G I++ Sbjct: 61 TRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQALGCRKWDIVWHVY 120 Query: 142 LPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAIRFGYQRFQTEVMIVTVAVLVV 201 LPEALPG++ TIT + L+S +AM+G +G GGLGDLAIR+GYQRF T+VM++ +A+L+V Sbjct: 121 LPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFDTQVMVIVIAMLIV 180 Query: 202 LVQLLQFFGDRLV 214 LV L+Q GD V Sbjct: 181 LVSLVQRTGDSYV 193 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.330 0.147 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 382,732 Number of extensions: 8669 Number of successful extensions: 87 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 91 Number of HSP's successfully gapped: 5 Length of query: 220 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 138 Effective length of database: 1,231,600 Effective search space: 169960800 Effective search space used: 169960800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)