BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0137.p (267 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310887|ref|YP_003774979.1| metal ion ABC transporter perip... 456 e-130 gi|300310325|ref|YP_003774417.1| metal ion ABC transporter perip... 209 1e-55 gi|300314030|ref|YP_003778122.1| metal ion ABC transporter perip... 202 2e-53 gi|300311120|ref|YP_003775212.1| metal ion ABC transporter perip... 189 2e-49 gi|300311637|ref|YP_003775729.1| metal ion ABC transporter perip... 127 6e-31 >gi|300310887|ref|YP_003774979.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 456 bits (1173), Expect = e-130, Method: Compositional matrix adjust. Identities = 226/255 (88%), Positives = 239/255 (93%) Query: 13 LLAASLTLFAAVAQAADKLVIAATPVPHAEILEFLKPTLAKEGVDLQVKVFTDYVQPAAQ 72 L A + F+ A AADKLVIAATPVPHAEILE +KP LAKEG+DLQVKVFTDYVQPAAQ Sbjct: 9 LFAGAALAFSVGAHAADKLVIAATPVPHAEILEHIKPALAKEGIDLQVKVFTDYVQPAAQ 68 Query: 73 TNEKQVDGNFFLHQPYLDEFKKSHKNDIEVPVTKVHVEPFAAYSQKYKKTADIPDGATIA 132 TNEKQVDGNFFLHQPYLD+FKKSHKNDIEVPV KVHVEPFAAYSQKYKK ADIP+GATIA Sbjct: 69 TNEKQVDGNFFLHQPYLDQFKKSHKNDIEVPVAKVHVEPFAAYSQKYKKIADIPNGATIA 128 Query: 133 IPNDPSNSGRALLLLARNGLIKLKDASNISATQKDITDNPKKLKFRELEAATLPRVLNQV 192 IPNDPSNSGRALLLLARNGLIKLKD +NISATQKDI +NPKKLKFR LEAATLPRVLNQV Sbjct: 129 IPNDPSNSGRALLLLARNGLIKLKDNTNISATQKDIVENPKKLKFRALEAATLPRVLNQV 188 Query: 193 DVALINTNYAIEARLNPVKDSLFIEDANSPYANLLVARQDNKDSPAIKKLAAALNSPAVK 252 DVALINTNYA+EA+LNPVKDSLFIEDANSPYANLLVAR+DNKDSPAIKKLAAALNSP VK Sbjct: 189 DVALINTNYALEAKLNPVKDSLFIEDANSPYANLLVAREDNKDSPAIKKLAAALNSPDVK 248 Query: 253 KFIEEKYKGAVVPAF 267 KFIEEKY+GA+VPAF Sbjct: 249 KFIEEKYQGAIVPAF 263 >gi|300310325|ref|YP_003774417.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 209 bits (533), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 117/257 (45%), Positives = 157/257 (61%), Gaps = 3/257 (1%) Query: 11 SLLLAASLTLFAAVAQAADKLVIAATPVPHAEILEFLKPTLAKEGVDLQVKVFTDYVQPA 70 L LAA L A AQ D++ + T PHAEI+E +K L K+GV ++V FTDY+QP Sbjct: 12 GLGLAAGLVSAPAFAQ--DQIKMGVTAGPHAEIMEQVKKLLEKDGVQMKVIEFTDYIQPN 69 Query: 71 AQTNEKQVDGNFFLHQPYLDEFKKSHKNDIEVPVTKVHVEPFAAYSQKYKKTADIPDGAT 130 A +D N + HQPYLD K V V P YS+K K D+ GA Sbjct: 70 AALAAGDLDANSYQHQPYLDAQIKDRGYKF-VSVGSTITFPMGVYSKKIKSLNDLKQGAR 128 Query: 131 IAIPNDPSNSGRALLLLARNGLIKLKDASNISATQKDITDNPKKLKFRELEAATLPRVLN 190 + +PNDP+N GRALL+L G+IKLK + + AT DI +NPKK+K EL+AA LPR L+ Sbjct: 129 VGVPNDPTNGGRALLVLQAKGVIKLKADAGLKATPLDIVENPKKIKIVELDAAQLPRSLD 188 Query: 191 QVDVALINTNYAIEARLNPVKDSLFIEDANSPYANLLVARQDNKDSPAIKKLAAALNSPA 250 D A+IN NYA A L+P KD++ +E + PYAN++ R +KD P + KL A +SP Sbjct: 189 DFDAAVINGNYAESAGLSPTKDAIAVEASTGPYANVIAVRIADKDKPWVAKLVKAYHSPE 248 Query: 251 VKKFIEEKYKGAVVPAF 267 VKKF+ EKYKG+V+ ++ Sbjct: 249 VKKFVLEKYKGSVITSW 265 >gi|300314030|ref|YP_003778122.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 276 Score = 202 bits (514), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 107/268 (39%), Positives = 164/268 (61%), Gaps = 9/268 (3%) Query: 8 RKLSLLLAASLTLFAAVAQAA-DKLV-IAATPVPHAEILEFLKPTLAKEGVDLQVKV--F 63 R+LS L+ + L AQAA D+++ + T PHA+I E + ++ +VK+ F Sbjct: 10 RRLSTLMVSMLASLVLNAQAAADQVIRVGVTSGPHAQIFEQARRVFERDNPGYKVKIIEF 69 Query: 64 TDYVQPAAQTNEKQVDGNFFLHQPYLDEFKKSHKNDIEVPVTKVHVEPFAAYSQKYKKTA 123 DY+QP A + ++D N + H+P+L+ K+ + K + P A YS+KY+K Sbjct: 70 NDYIQPNAALDAGELDANSYQHRPFLNAQIKTRGYKLYAE-GKTMIGPMAIYSRKYRKLE 128 Query: 124 DIPDGATIAIPNDPSNSGRALLLLARNGLIKLKDA----SNISATQKDITDNPKKLKFRE 179 D+P GA I IPNDP+N R LLLL ++G IKL+ + +AT DIT+NPKK KF E Sbjct: 129 DVPVGARIGIPNDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPIDITENPKKWKFVE 188 Query: 180 LEAATLPRVLNQVDVALINTNYAIEARLNPVKDSLFIEDANSPYANLLVARQDNKDSPAI 239 ++AA LPR L+ +D + +N +YA +A LNP +DSL +E +SPYA L+ R+ ++ P + Sbjct: 189 IDAAQLPRTLDDLDASAVNADYAAKAGLNPARDSLVVESGDSPYACLIAVREKDRAQPWL 248 Query: 240 KKLAAALNSPAVKKFIEEKYKGAVVPAF 267 KL A SP VK++IE ++KG ++ A+ Sbjct: 249 GKLVQAYQSPEVKRYIETEFKGGILAAW 276 >gi|300311120|ref|YP_003775212.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 189 bits (481), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 110/265 (41%), Positives = 161/265 (60%), Gaps = 6/265 (2%) Query: 8 RKLSLLLAASLTLFAAVAQAADKLVI-AATPVPHAE-ILEFLKPTLAKEGVDLQVKVFTD 65 ++L+ + A SL L + QA DK I V AE I + +K A++G+++Q VF+D Sbjct: 11 KRLAAIGALSLALVPQLGQAQDKQKIKVGISVGSAEAIFDVVKKVAARDGLEIQTVVFSD 70 Query: 66 YVQPAAQTNEKQVDGNFFLHQPYLDEFKKSHKNDIEVPVTKVHVEPFAAYSQKYKKTADI 125 Y+QP A +D N F H+PYL+ + I VPV P YS+K++ + Sbjct: 71 YLQPNAALAAGDLDANAFQHRPYLESQIAARGYRI-VPVGLTITAPLGIYSRKFRSVEQL 129 Query: 126 PDGATIAIPNDPSNSGRALLLLARNGLIKLKDA---SNISATQKDITDNPKKLKFRELEA 182 P GA I I NDPSN RALLLL + GLI+LK + ++AT D+ +NP+KLK EL+A Sbjct: 130 PQGAAIGIQNDPSNGNRALLLLQKAGLIRLKPGVGENGVNATPLDVIENPRKLKLVELDA 189 Query: 183 ATLPRVLNQVDVALINTNYAIEARLNPVKDSLFIEDANSPYANLLVARQDNKDSPAIKKL 242 A LPR L+ + A IN +YA +A L+ KD++ +ED YAN++ R ++KD P ++KL Sbjct: 190 AQLPRSLDDLAAASINNDYAFKAGLSLQKDTIAVEDPRGRYANIIATRAEDKDRPWVRKL 249 Query: 243 AAALNSPAVKKFIEEKYKGAVVPAF 267 A +S V+KFIE ++KG++VPAF Sbjct: 250 VQAYHSEEVRKFIETEFKGSLVPAF 274 >gi|300311637|ref|YP_003775729.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 127 bits (320), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 89/256 (34%), Positives = 129/256 (50%), Gaps = 8/256 (3%) Query: 9 KLSLLLAASLTLFA-AVAQAADKLVIAATPVPHAEILEFLKPTLAKEGVDLQVKVFTDYV 67 K S L+ SLT+ + AQAADKL I P + + + ++G+D+QV FTD+ Sbjct: 2 KFSHLVFLSLTVLSLQAAQAADKLRIGVVPGAYGDSVAVAAKEAKRQGIDVQVVEFTDWT 61 Query: 68 QPAAQTNEKQVDGNFFLHQPYLDEFKKSHKNDIEVPVTKVHVEPFAAYSQKYKKTADIPD 127 P + +D N+F HQP+LD + + + T + + YS KYK +P Sbjct: 62 TPNVALDAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGI-LSNVGLYSLKYKSLTALPQ 120 Query: 128 GATIAIPNDPSNSGRALLLLARNGLIKLKDASNISATQKDITDNPKKLKFRELEAATLPR 187 GA + I NDP N GRALLLL GLIKLK + DI DNP+KL F E+E L R Sbjct: 121 GAKVGIANDPVNQGRALLLLQNVGLIKLKPKVGYLGSIDDIIDNPRKLSFVEVEGPQLVR 180 Query: 188 VLNQVDVALINTNYAIEAR-LNPVKDSLF--IEDANSPYANLLVARQDNKDSPAIKKLAA 244 + VD+A ++ + A+ +P + IEDA +A V R + + P ++K Sbjct: 181 ITPDVDLAQGYPHFIVAAKAFDPSSGLAYSGIEDAR--FAIQFVTRANRVNDPVVQKFIQ 238 Query: 245 AL-NSPAVKKFIEEKY 259 NS AV+ I + Sbjct: 239 IYQNSAAVRADIGRAF 254 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.131 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 652,172 Number of extensions: 23129 Number of successful extensions: 88 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 81 Number of HSP's successfully gapped: 5 Length of query: 267 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 183 Effective length of database: 1,222,130 Effective search space: 223649790 Effective search space used: 223649790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)