BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0135.p
         (428 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312223|ref|YP_003776315.1| hypothetical protein Hsero_2918...   322   5e-89
gi|300313840|ref|YP_003777932.1| hypothetical protein Hsero_4558...   154   1e-38

>gi|300312223|ref|YP_003776315.1| hypothetical protein Hsero_2918
           [Herbaspirillum seropedicae SmR1]
          Length = 511

 Score =  322 bits (824), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 181/292 (61%), Positives = 213/292 (72%), Gaps = 15/292 (5%)

Query: 1   VNKKTLAWIASALFSLASGISTVSAQDMNRPPAVFSQEELDQMLAPVALYPDSLLAQVLM 60
           +NK TLAW A  +FSL SG+   +       PAV++Q++LDQMLAPVALYPDSLLAQVLM
Sbjct: 1   MNKSTLAWAACLVFSLVSGMPAQAQSAYPPAPAVYTQQQLDQMLAPVALYPDSLLAQVLM 60

Query: 61  AATYPLEVVQAARFVDSRPGLQGDALARSIAPMPWDPSVKSLAQFPSVLAMMNDKLDWTQ 120
           A+TYPLEVVQA RF+++RPGLQGD LAR++APMPWDPSVK+L QFPSVLAMMND+LDW Q
Sbjct: 61  ASTYPLEVVQAQRFIEARPGLQGDGLARAVAPMPWDPSVKALVQFPSVLAMMNDRLDWMQ 120

Query: 121 RLGDAFLSQQANVMDTVQNLRVKAQIAGNLQSSNQQRIVQQEQIIVIEPVNPQVIYVPYY 180
           +LG AFL QQ  VMDTVQNLR +A+IAG L+SS QQR+V Q+  I I PVNPQV+YVPYY
Sbjct: 121 QLGQAFLGQQPAVMDTVQNLRERARIAGTLESSPQQRVVVQDDFIEIVPVNPQVVYVPYY 180

Query: 181 NPTVVYGGWWWPQRPPVYWAPPPRYRPPSYN--VSIGISFGAGTGIVRSVYSDARPDWRQ 238
           NP VVYG WWWP  PPV WAPPPRYRPPSYN   S  ISF  G G++ +V+ +ARPDWR+
Sbjct: 181 NPVVVYGDWWWPSAPPVVWAPPPRYRPPSYNPGFSASISFSTGIGVMSAVFGEARPDWRE 240

Query: 239 HHVLVNNV-------------RINNVNVTNNVTRNVVVNNKPVVWQHNSRNG 277
             V+V                    VN    + RNV VN +PVVW H  R G
Sbjct: 241 RQVMVTQTRITNVNNINNNVVNNRIVNNNVTINRNVTVNQRPVVWHHEGRYG 292


>gi|300313840|ref|YP_003777932.1| hypothetical protein Hsero_4558
           [Herbaspirillum seropedicae SmR1]
          Length = 555

 Score =  154 bits (389), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/234 (41%), Positives = 129/234 (55%), Gaps = 39/234 (16%)

Query: 38  EELDQMLAPVALYPDSLLAQVLMAATYPLEVVQAARFVDSRPGLQGDALARSIAPMPWDP 97
           E+L QM+AP+AL+PD L+AQVL  ATYP +VV A +++     L+GD L  +    PWD 
Sbjct: 57  EQLSQMVAPIALFPDKLVAQVLAGATYPDQVVAANQWLGQNSALKGDILQAAEDKQPWDV 116

Query: 98  SVKSLAQFPSVLAMMNDKLDWTQRLGDAFLSQQANVMDTVQNLRVKAQIAGNLQSSNQQR 157
           SVKSL  FP+VL+ M    DWT+ LGDAF++   +VM+ +Q LR+KAQ AG+L+SS Q R
Sbjct: 117 SVKSLTMFPAVLSQMAANPDWTRALGDAFVNDPNDVMNAIQALRLKAQQAGHLKSSPQLR 176

Query: 158 IVQQE-------------------------QIIVIEPVNPQVIYVPYYNPTVVYGGWWWP 192
           +   E                         Q IVIE   P  +YVP Y+P VVYG     
Sbjct: 177 VSTTERSTSTVRYETPQPVYAGAPVIAPPPQTIVIESSQPDTVYVPRYDPAVVYGA---- 232

Query: 193 QRPPVYWAPPPRYRPPSY---NVSIG-ISFGAGTGIVRSV--YSD-ARPDWRQH 239
              PV   P   YRPPS+    V +G +SFG G  +  ++  +SD    DW  H
Sbjct: 233 ---PVPVYPGYVYRPPSHVADEVVVGALSFGVGVFVGEAISHHSDWGWHDWGMH 283


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 834,743
Number of extensions: 28976
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 428
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 340
Effective length of database: 1,203,190
Effective search space: 409084600
Effective search space used: 409084600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)