BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0133.p
         (485 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311216|ref|YP_003775308.1| exopolyphosphatase [Herbaspiril...   736   0.0  

>gi|300311216|ref|YP_003775308.1| exopolyphosphatase [Herbaspirillum
           seropedicae SmR1]
          Length = 485

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/484 (74%), Positives = 413/484 (85%), Gaps = 1/484 (0%)

Query: 1   MFAAVDLGSNSFRLHIGKHEGDAIRVVKSARDPIRLAAGLDKNGKLTPQAIVGAVESLAR 60
           MFAAVDLGSNSFRLHIGK+E + IRV+KSARDPIRLAAG+DK G LT QA   A++SL R
Sbjct: 1   MFAAVDLGSNSFRLHIGKYEDEGIRVIKSARDPIRLAAGIDKTGNLTEQACQSAIDSLTR 60

Query: 61  FRTILRDYQLDAVRVVATNTLRVAKNAHEFLPDAERAIGYPVEIISGEEEGRLIYMGVAG 120
           FR ILRDY L AVRVVATNTLRVAKNA E LP  ERAIGYPVEIISGEEEGRLIYMGVAG
Sbjct: 61  FRAILRDYPLTAVRVVATNTLRVAKNAGELLPALERAIGYPVEIISGEEEGRLIYMGVAG 120

Query: 121 ALALPDEDRLVIDIGGGSTEVILGHGSDVRRVESFGIGTVNQSQAFFGDGYINEAAFERA 180
            LA   E+R+VIDIGGGSTEVI G G  +R VESFGIGTVNQS AFF DG I  AAFERA
Sbjct: 121 VLADAGEERMVIDIGGGSTEVIRGLGEHIRHVESFGIGTVNQSLAFFPDGAITAAAFERA 180

Query: 181 ILSARSHVEDAVVPFGAQH-RSKVYGSSGTMRAIADTIARNGMGDGRITPESVEELKQRL 239
           I+SARSHVEDAV  F     +  VYGSSGTMRAIADTI RN MGDGRIT  S+ +L QRL
Sbjct: 181 IISARSHVEDAVHLFSFDAAKVNVYGSSGTMRAIADTIRRNNMGDGRITLPSLADLMQRL 240

Query: 240 IAFGHVDHIELAGMKPDRAAVIMGGLAVLIGLMQELNISVISPVEAGLRMGVMWDLQLRA 299
           I FGHV  I L GMKPDRA VIMGGLAVLIG MQE  I VI+PVEAGLRMGVMWDLQLRA
Sbjct: 241 IDFGHVSQIALDGMKPDRAGVIMGGLAVLIGFMQEFGIEVITPVEAGLRMGVMWDLQLRA 300

Query: 300 TQRDRREQSVDDFSRRFHIDELRARQVAETALGFFQMLKPGNEAYAKYLNWSALLHEAGL 359
           T+ DRR++SV++F+RRFHID  RA  VA+TALGFFQ+LKP  ++YA+YL WSALLHE GL
Sbjct: 301 TKADRRDRSVEEFARRFHIDAARAHGVADTALGFFQLLKPATDSYARYLYWSALLHETGL 360

Query: 360 IVSQSSYHKHSSYLIANADLPGFTTREQRVMSTLILGQKGNLRKIGEVVSDPDFAKAVLA 419
           +VS + YHKHS+Y+IANADLPGFTTREQR+MSTLILGQKGNL+KI E+++D DFAKAVLA
Sbjct: 361 VVSPTGYHKHSAYMIANADLPGFTTREQRLMSTLILGQKGNLKKISEMLADIDFAKAVLA 420

Query: 420 LRLAVMFMHAHITLDLDDVRLKMKSRIDIEIKRDWLRDHPTVSYWMQKEQEWWSGIGIDF 479
           LRLAVMF HAHITLDL+ VR+K+KSRID+EI+RD++++HP++S+W QKEQEWW+GIG+DF
Sbjct: 421 LRLAVMFRHAHITLDLEKVRVKLKSRIDLEIRRDYIKEHPSISFWFQKEQEWWAGIGVDF 480

Query: 480 SIRV 483
           +++V
Sbjct: 481 AVKV 484


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,552,662
Number of extensions: 67528
Number of successful extensions: 240
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 396
Effective length of database: 1,198,455
Effective search space: 474588180
Effective search space used: 474588180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)