BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0131.p
         (147 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311215|ref|YP_003775307.1| methyltransferase transmembrane...   234   3e-63

>gi|300311215|ref|YP_003775307.1| methyltransferase transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  234 bits (596), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 121/147 (82%), Positives = 134/147 (91%)

Query: 1   VPAVADPGANLVRLAHQHGIQVRPLVGPSSLLLAVMSSGLNGQSFAFNGYLPTDAAQRAK 60
           VPAVADPGANLVRLAHQHGIQVRPLVGPSSLLLAVM+SGLNGQSFAFNGYLPTDA  R+K
Sbjct: 108 VPAVADPGANLVRLAHQHGIQVRPLVGPSSLLLAVMASGLNGQSFAFNGYLPTDAEARSK 167

Query: 61  RIKQLEDRSRQEKQTQLLIETPYRNGAMLEALAAACNGTTLISVATDLTLATEAIRTQTA 120
           RI+QLEDRSR+EKQTQLLIETPYRNGAML+ALA +C   TLI VATDL+L TE +RTQTA
Sbjct: 168 RIRQLEDRSRKEKQTQLLIETPYRNGAMLDALAQSCQPGTLICVATDLSLPTETVRTQTA 227

Query: 121 AKWKSELGAGKTPDFHKKPTVFLLLAE 147
           A+W++ L A + PDFHKKPTVFLLLA+
Sbjct: 228 AQWQAALAARQAPDFHKKPTVFLLLAD 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 460,516
Number of extensions: 16361
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 2
Length of query: 147
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,255,275
Effective search space: 87869250
Effective search space used: 87869250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)