BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0128.p
         (360 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311214|ref|YP_003775306.1| periplasmic serine protease [He...   431   e-122
gi|300311212|ref|YP_003775304.1| phosphoglycolate phosphatase [H...   159   3e-40

>gi|300311214|ref|YP_003775306.1| periplasmic serine protease
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score =  431 bits (1108), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/278 (74%), Positives = 238/278 (85%), Gaps = 11/278 (3%)

Query: 1   MSNNEFENPAAQP----PKPAEPVPPTTGTATAVAAEEKKGGWERDVLEKLALFAVKEQR 56
           MSNNE E+P +QP    P P+  +P       A   ++KK GWERDVLEKLALFAVKEQR
Sbjct: 1   MSNNESEHPESQPQSTPPAPSSSIP-------ASVRDDKKSGWERDVLEKLALFAVKEQR 53

Query: 57  ARRRWSIFFKIAGLAVFVFVIWSAFNYTKSESEPVGTHTALVEISGTIEAEGRGSAAAVI 116
           ARRRW +FF+IA LAV V  +W AF + + E+EP+G HTALVEI G I++EG+GSA  VI
Sbjct: 54  ARRRWGVFFRIALLAVVVLGVWMAFTFNRIENEPLGPHTALVEIKGAIDSEGQGSAGVVI 113

Query: 117 PALDKAFAADDSLGVILKINSPGGSPVQAGMINDEIVRLRKEYPKKPLYVVVEEMCASGG 176
           PALDKAFAA+DS+GVILKINSPGGSPVQAGMINDEI RLRK+YPKKP+YVVVEE+CASGG
Sbjct: 114 PALDKAFAANDSVGVILKINSPGGSPVQAGMINDEITRLRKQYPKKPIYVVVEEVCASGG 173

Query: 177 YYIAAAADKIYVNKASIVGSIGVLMDGFGFTGLMDKVGVERRLLTAGENKGFLDPFSAQN 236
           YYIAAAADKI+VNKAS+VGS+GVLMDGFGFTGLMDK+GVERRLLTAGENK FLDPFS Q+
Sbjct: 174 YYIAAAADKIFVNKASLVGSVGVLMDGFGFTGLMDKLGVERRLLTAGENKSFLDPFSPQS 233

Query: 237 PKQKEYAQQMLNEIHQQFIDVVRKGRGQRLKETPETFA 274
           PKQ+EYAQ ML EIHQQFI+VVR+GRG RLKETP+TF+
Sbjct: 234 PKQREYAQSMLQEIHQQFIEVVRQGRGARLKETPDTFS 271


>gi|300311212|ref|YP_003775304.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score =  159 bits (403), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 74/87 (85%), Positives = 81/87 (93%)

Query: 274 ATRCADETFSKPHPAMLQELTRELGQEMGRTLMIGDTTHDLQMALNAGAAGVAVEFGAHP 333
           A+RCADETFSKPHPAMLQELTRELGQ+M RTLMIGDTTHDLQMA+NAGAAGVAVEFGAHP
Sbjct: 133 ASRCADETFSKPHPAMLQELTRELGQDMHRTLMIGDTTHDLQMAINAGAAGVAVEFGAHP 192

Query: 334 VEQLQALNPLYSAGSIKVLHQWLNDNA 360
            +QLQ L+PLYSA SI+ LHQWL D+A
Sbjct: 193 PQQLQTLSPLYSARSIRELHQWLCDHA 219


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,027,802
Number of extensions: 42683
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 2
Length of query: 360
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,212,660
Effective search space: 332268840
Effective search space used: 332268840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)