BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0118.p
         (331 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311207|ref|YP_003775299.1| molybdopterin biosynthesis MoeA...   421   e-119
gi|300311413|ref|YP_003775505.1| molybdopterin biosynthesis prot...   184   1e-47

>gi|300311207|ref|YP_003775299.1| molybdopterin biosynthesis MoeA
           protein [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score =  421 bits (1081), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/259 (79%), Positives = 226/259 (87%)

Query: 73  GYALRXADIGLLASLGVAEIPVQRRLRVAFFSTGDELRSVGEPLDPGCVYDSNRYTLYGM 132
           G  LR +DIGLLASLG+AE PVQRRLRVAFFSTGDELRSVGEPLD GCVYDSNRYTL+GM
Sbjct: 170 GRILRPSDIGLLASLGLAEAPVQRRLRVAFFSTGDELRSVGEPLDEGCVYDSNRYTLHGM 229

Query: 133 LTRLGCDIIDMGVVRDDPVAMEAAFRSACEHADAVITSGGVSVGAADYTKQTMTKLGDML 192
           LTRLGC+++DMGVV DDP A+EAAFRSACE ADAVITSGGVSVGAADYTKQ M  LG+M 
Sbjct: 230 LTRLGCEVLDMGVVPDDPAALEAAFRSACEEADAVITSGGVSVGAADYTKQIMASLGEMA 289

Query: 193 FWKIGMRPGRPMAFGRIASQDRGAYLFGLPGNPVAVMVSFYFFVRDALLRMSGADASPLP 252
           FWKI MRPGRP+AFGRI S+ R AYLFGLPGNPVAV VSF FFVRDALLR++GA+A PLP
Sbjct: 290 FWKIAMRPGRPLAFGRIRSRGREAYLFGLPGNPVAVTVSFSFFVRDALLRLAGAEAKPLP 349

Query: 253 RLQATSLSAIRKKPGRTEYQRGILAPDSDGVWKVKLTGAQGSGILRSMSDANCIIVLDDA 312
           RL+  + +AIRKK GRTEYQRGILAPD  G W V+LTG QGSGILRSMSDANCII L+  
Sbjct: 350 RLRVKTATAIRKKAGRTEYQRGILAPDDSGNWSVRLTGMQGSGILRSMSDANCIIELEHD 409

Query: 313 QGDVAAGDPVQVVLFDGLI 331
           +GDVAAG+ V VVLFDGL+
Sbjct: 410 RGDVAAGEEVAVVLFDGLV 428



 Score =  114 bits (284), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/81 (65%), Positives = 66/81 (81%)

Query: 1  MTQLSLSDIVSCVSGYDPDAMTVPQAQKIIHDFVQPISSIERVAIRSALDRTLAADIIST 60
          MT  SL+DIVSC+SGYDP AMTV +AQ +I +F+ PI ++E++ IRSAL R LA DI+S 
Sbjct: 1  MTLPSLNDIVSCISGYDPHAMTVERAQAVIREFIHPIEAVEKLPIRSALSRVLAQDIVSR 60

Query: 61 IDVPANDNSAMDGYALRXADI 81
          IDVPA+DNSAMDGYALR  D+
Sbjct: 61 IDVPAHDNSAMDGYALRGEDL 81


>gi|300311413|ref|YP_003775505.1| molybdopterin biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 425

 Score =  184 bits (466), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/303 (39%), Positives = 167/303 (55%), Gaps = 26/303 (8%)

Query: 41  ERVAIRSALDRTLAADIISTI--DVPANDNSAMDGYALRXADIGLLASLGVAEIPVQRRL 98
           E V IR       A + + TI  D+         G  LR  ++GL AS+G A++ V RR+
Sbjct: 136 EHVVIRHV---PAAGEWVRTIGEDIRQGSTILAAGTRLRPQELGLAASIGQAQLQVLRRV 192

Query: 99  RVAFFSTGDELRSVGEPLDPGCVYDSNRYTLYGMLTRLGCDIIDMGVVRDDPVAMEAAFR 158
           RVA F TGDEL   G+PL PG +Y+SNR+ L G+L +LGC + D G+V D   A     R
Sbjct: 193 RVAVFFTGDELTMPGQPLKPGGIYNSNRFLLRGLLQKLGCQVSDFGIVPDSLQATRETLR 252

Query: 159 SACEHADAVITSGGVSVGAADYTKQTMTKLGDMLFWKIGMRPGRPMAFGRIASQDRG--- 215
            A    D +ITSGGVSVG  D+ K  +   G +  W+I M+PG+P+AFG++    RG   
Sbjct: 253 EAAREHDLIITSGGVSVGEEDHVKPAVEAEGRINMWQIAMKPGKPLAFGQV---RRGEGT 309

Query: 216 --AYLFGLPGNPVAVMVSFYFFVRDALLRMSGADASPLPRL----QATSLSAIRKKPGRT 269
             A+  GLPGNPV+  V+F  FVR  LLR+ G     LPR     QA +L A    P R 
Sbjct: 310 GEAFFMGLPGNPVSSFVTFLLFVRPFLLRLQG-----LPREAVLPQAVALRADFDWP-RA 363

Query: 270 EYQRGILAPDSDGVWKVKLTGAQGSGILRSMSDANCIIVLDDAQGD-VAAGDPVQVVLFD 328
           + ++  L    +    + L  +QGS +L S + A+ +I  D+  G  +AAGD VQ + FD
Sbjct: 364 DRRQEFLRVRRNAQGGLDLFPSQGSAVLTSTAWADGLI--DNPPGQTIAAGDMVQFLAFD 421

Query: 329 GLI 331
            L+
Sbjct: 422 HLL 424


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,076,881
Number of extensions: 46082
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 3
Length of query: 331
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,212,660
Effective search space: 297101700
Effective search space used: 297101700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)