BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0115.p
         (491 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311206|ref|YP_003775298.1| hypothetical protein Hsero_1881...   753   0.0  

>gi|300311206|ref|YP_003775298.1| hypothetical protein Hsero_1881
           [Herbaspirillum seropedicae SmR1]
          Length = 455

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/447 (85%), Positives = 410/447 (91%)

Query: 36  LQQLKSELQRHQQDLAERSERELRDQLQSNAQSTRQELGGNFGQLQQTLAAQMTSVATLQ 95
           L  ++  LQRHQQD+ ER ERELR Q+Q++AQSTRQELG +F QLQQTLA QM SVA+LQ
Sbjct: 2   LAHMQQVLQRHQQDIGERIERELRSQVQASAQSTRQELGASFAQLQQTLATQMASVASLQ 61

Query: 96  NNQIDSFAQQLVKLNETNAQQLDGMRQTMNLQAQASREEQAVSLKRFGDTLNQTLTTLTE 155
           N QID FAQQLVKLNETNAQQLD MRQ++ LQAQ SREEQAVSLKRFGDTLNQ L+ LTE
Sbjct: 62  NQQIDGFAQQLVKLNETNAQQLDSMRQSITLQAQVSREEQAVSLKRFGDTLNQQLSALTE 121

Query: 156 SNAQRMAEVRATLEAKIKDLQLDNGNRLEEMRKTVDEKLHATLEQRLGESFKLVSDRLDK 215
           SNAQRM EVRATLEAKIKDLQ DN  +L+EMRKTVDEKLHATLEQRLGESFKLVSDRLDK
Sbjct: 122 SNAQRMGEVRATLEAKIKDLQTDNAQKLDEMRKTVDEKLHATLEQRLGESFKLVSDRLDK 181

Query: 216 VHQGLGEMQQLAIGVGDLKRVLTNVKTRGTWGEVQLEMLLEQMLTPDQYAKNVETVPNTG 275
           VHQGLGEMQQLA GVGDLKRVLTNVKTRGTWGEVQLE+LLEQMLTP+QY KNVETV  +G
Sbjct: 182 VHQGLGEMQQLATGVGDLKRVLTNVKTRGTWGEVQLEILLEQMLTPEQYGKNVETVRGSG 241

Query: 276 ERVEFAIKLPGNDDGGTPVWMPIDAKFPKEQYERLAEAADRADADGVAQAGRELERAVRG 335
           ERVEFAI+LPG  + G PVWMPIDAKFPKEQYERL EAA+RADADGVA AG+ELERAVR 
Sbjct: 242 ERVEFAIRLPGAKEEGEPVWMPIDAKFPKEQYERLVEAAERADADGVAAAGKELERAVRT 301

Query: 336 EAKTIAEKYLSPPLTTDFAILFLPTEGLYAEVMRRPGLSDDLQRTHRVSIAGPSTLSALL 395
           EA+TIAEKYLSPPLTTDFAILFLPTEGLYAEVMRRPGLSDDLQR+ RV+IAGPSTLSALL
Sbjct: 302 EARTIAEKYLSPPLTTDFAILFLPTEGLYAEVMRRPGLSDDLQRSCRVTIAGPSTLSALL 361

Query: 396 NSLQMGFRTLALEKRSSEVWQVLGAVKTEFGKFGDVLAATKSTLERAAKNIEQAETRTRQ 455
           NSLQMGFRTLALEKRSSEVWQVLGAVKTEFGKFG+VLA+TK+ LERAA+NI+QAETRTRQ
Sbjct: 362 NSLQMGFRTLALEKRSSEVWQVLGAVKTEFGKFGEVLASTKTALERAARNIDQAETRTRQ 421

Query: 456 MTRKLKSVEALPSDTAQKLLGTAEPEI 482
           MTRKLKSVEALP+D AQKLLG AEPE+
Sbjct: 422 MTRKLKSVEALPADAAQKLLGAAEPEL 448


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,209,961
Number of extensions: 43921
Number of successful extensions: 172
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 402
Effective length of database: 1,198,455
Effective search space: 481778910
Effective search space used: 481778910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 132 (55.5 bits)