BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0113.p
         (731 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311204|ref|YP_003775296.1| lysophospholipase L1 biosynthes...   396   e-111

>gi|300311204|ref|YP_003775296.1| lysophospholipase L1 biosynthesis
           ABC transporter permease [Herbaspirillum seropedicae
           SmR1]
          Length = 832

 Score =  396 bits (1018), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/293 (67%), Positives = 225/293 (76%), Gaps = 28/293 (9%)

Query: 466 LFPMIRGRLVQINGKPVTNDTYQEDRAKRLVDREFNLSTMRDLPAQNTIVGGKWYDDSRP 525
           L+PMIRGRLVQING+ ++   Y EDRAKRLVDREFNLST+R++P  N IV G+WYDD +P
Sbjct: 539 LYPMIRGRLVQINGRAISAADYAEDRAKRLVDREFNLSTLREIPPGNGIVAGRWYDDRQP 598

Query: 526 EASVEEGLAKTLKLSLGDRLQFDIAGQLVSVPVTSIRKLEWGSLRVNFFVIINPAAMREM 585
           EASVE GLA+TL + LGDRLQFDIAGQLV  PVTS+RKLEWGSLRVNFFVI+NP  MR+ 
Sbjct: 599 EASVERGLAQTLGIKLGDRLQFDIAGQLVEAPVTSLRKLEWGSLRVNFFVILNPTLMRDT 658

Query: 586 PQTWITAFHLPDAKAGLGNVLTRDFPNLTVVDIGSVLKQIQDIVDQVISAVEFLFLFTLT 645
           PQ+WITA HL   +  LGN LTRD+PNLTVVDIGSVL+QIQD+V QVISAVEFLFLFTL 
Sbjct: 659 PQSWITAVHLNPQQEALGNTLTRDYPNLTVVDIGSVLRQIQDVVGQVISAVEFLFLFTLC 718

Query: 646 AGVLVLYAALVGTQDERVREAGLLRALGAAGIGWA------------------------- 680
           +GVLVLYAAL G+QDERVREAGLLRALGA  +  A                         
Sbjct: 719 SGVLVLYAALAGSQDERVREAGLLRALGATRVELARAQRIEVLLVGALAGLLAASGAAAI 778

Query: 681 ---LAHYVFDFEWRFSPWLWLAGAGIGMACAVFGGWAGLRNVLSRPPLQTLRE 730
              LAHYVF+F+W FSP +WLAG  +G AC+  GGWAGLR+VL RPPLQTLRE
Sbjct: 779 GWALAHYVFNFDWSFSPLVWLAGMSLGAACSALGGWAGLRHVLRRPPLQTLRE 831



 Score =  247 bits (630), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 141/187 (75%), Positives = 164/187 (87%)

Query: 210 PAASWWPALQGVAVGLLLLVGFALPPLLQLRNVPHNRVIRREASAPKAMSIATYALGMLV 269
           P A W PA+QGVA GLLLL+GFALPP+LQLRNVPHNRVIRR+   P+ +++ATY LG LV
Sbjct: 348 PPAGWQPAVQGVAAGLLLLLGFALPPILQLRNVPHNRVIRRDQLTPQPLTVATYGLGTLV 407

Query: 270 FAGLLLWQAGDIKLGAMTAAGFLGGFALFALIAWACLRSVQSLRGLFNNQSWRFAIDGLQ 329
           F+GLLLWQAGD+KLG +T AGFLGGF LFAL+AW CLR+++SLRGL + QSWRFAIDGLQ
Sbjct: 408 FSGLLLWQAGDLKLGLLTIAGFLGGFGLFALVAWLCLRALRSLRGLVDRQSWRFAIDGLQ 467

Query: 330 RRPGATTMQIVAVGLGLMALLLLTVIRGDLIGAWRQATPADAPNRFVINIQPDQKDVVEQ 389
           RRP A  MQ+VA+GLGLMALLLLTVIRGDL+GAWRQATPADAPNRF+INIQPDQ+  VEQ
Sbjct: 468 RRPAAAVMQVVALGLGLMALLLLTVIRGDLVGAWRQATPADAPNRFIINIQPDQRQAVEQ 527

Query: 390 KLKQAGL 396
            L+Q G+
Sbjct: 528 LLRQGGV 534



 Score =  171 bits (434), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 99/138 (71%), Positives = 110/138 (79%), Gaps = 4/138 (2%)

Query: 1   MFFLSLRMTRRDWRAGELRFLLIALIVAVAALSSVGFFVDRMRAGLTRDAHQLLGADLLV 60
           MF  +LRMT RDWR GELRFLLIALIVAVA+LSSVGFFVDRMRAG+TRDAHQLLGADLLV
Sbjct: 1   MFQQALRMTWRDWRTGELRFLLIALIVAVASLSSVGFFVDRMRAGMTRDAHQLLGADLLV 60

Query: 61  GADQPLDPAWLEQARQHQLTMAQTVVFPSMAIAGEGDAGANAARSILSSIKAVTSAYPLR 120
            ADQPL P W+++A    L  AQT VFPSMA AGEGD    AAR++L+SIKAVT+ YPLR
Sbjct: 61  AADQPLPPQWMQRAAAQGLQQAQTQVFPSMAQAGEGD----AARAVLASIKAVTAGYPLR 116

Query: 121 GQLKLAGADGARXAPEQI 138
           GQL+L  A GA    E I
Sbjct: 117 GQLRLQTASGADRPAEGI 134



 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 40/47 (85%)

Query: 138 IKAYQQWLQKTIDGGNVKGVRIESLESGRQEMRATLDRAEQFLSLVG 184
           +K +QQ L++ I+   ++GVR+ESLE+GR EMRATLDRAEQFLSLVG
Sbjct: 220 VKQFQQELERQIEADKLRGVRLESLENGRPEMRATLDRAEQFLSLVG 266


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,000,169
Number of extensions: 79039
Number of successful extensions: 374
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 4
Length of query: 731
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 639
Effective length of database: 1,184,250
Effective search space: 756735750
Effective search space used: 756735750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 134 (56.2 bits)