BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0108.p
         (146 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311201|ref|YP_003775293.1| threonine efflux protein [Herba...   219   9e-59

>gi|300311201|ref|YP_003775293.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score =  219 bits (557), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 112/152 (73%), Positives = 125/152 (82%), Gaps = 8/152 (5%)

Query: 1   VASEAAFNTIKILGAAYLIYLGWSQWRSPVHVDEAQAARPAAPA--------AWWQRTVT 52
           VASE AFN IK+ GA YLIYLG+SQWR+ V  +E   A  AA A         WWQR +T
Sbjct: 66  VASETAFNVIKVAGALYLIYLGFSQWRARVPSEEQGEALDAANASARAHARQTWWQRCMT 125

Query: 53  GFLTNATNPKGIVFMVAVLPQFINHERSLWLQLLLMAITMVAVDLVVMHGYAFAASRMQR 112
           GFLTNATNPKGIVFMVAVLPQFI+H+R LWLQLL++A+TMVAVDLVVMHGYAFAASR+QR
Sbjct: 126 GFLTNATNPKGIVFMVAVLPQFIDHDRPLWLQLLVLAVTMVAVDLVVMHGYAFAASRLQR 185

Query: 113 FFRDAKAVRMQNRFFGGVLMLVGAGLFFFKRS 144
           FFR  KA+R QNRFFGGVLMLVGAGLFFFKR+
Sbjct: 186 FFRSQKAIRAQNRFFGGVLMLVGAGLFFFKRT 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 387,626
Number of extensions: 11622
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,255,275
Effective search space: 86613975
Effective search space used: 86613975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 126 (53.1 bits)