BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0106.p
         (475 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311198|ref|YP_003775290.1| PP-loop superfamily ATPase [Her...   470   e-134

>gi|300311198|ref|YP_003775290.1| PP-loop superfamily ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 449

 Score =  470 bits (1210), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 258/442 (58%), Positives = 312/442 (70%), Gaps = 11/442 (2%)

Query: 39  VIAVAYSGGLDSSVLLHLAAAFAREQG--VRLFAFHIHHGISANADQWQAHCRAQSERAG 96
            +AVAYSGGLDS+VLL +AA +ARE G   RL   H+HHG+S +AD W AH +A   + G
Sbjct: 12  TLAVAYSGGLDSTVLLWVAAQWARENGGTSRLAPLHVHHGLSPHADAWLAHAQACCAQLG 71

Query: 97  AEFDTRNVTLAIKDKSGVEEAARVARYQALGQLCREHGAGLLLTAHHLDDQAETVLLQML 156
               +  V L     SGVEEAAR+ARY ALG+LCR+ GA +LLTAHHLDDQAETVLLQ+L
Sbjct: 72  LVLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGARVLLTAHHLDDQAETVLLQLL 131

Query: 157 RGSGVAGISGMDSANKAAELLGDAGLLMARPLLGAARGELEQYAQQEQVPFVEDESNSDT 216
           RGSG+AG+SGMD  N A  LLGD  LLMARP LG  R +LE  A    + ++EDESNSD 
Sbjct: 132 RGSGLAGLSGMDRCNTAPALLGDDRLLMARPFLGVTRAQLEAVADAMSLKWIEDESNSDP 191

Query: 217 RYARNALRHKVMPVLAEFFPGFQERFARAAGHAQAAQRLLTVLASQDLAACLEGEYLNVS 276
           RY RNALRH+VMP L + FPG+Q+R ARAAGHAQ AQ LL  +A QDLA C E E+L + 
Sbjct: 192 RYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLAHCREDEHLRMP 251

Query: 277 ALRRLDPERIDNLLRYWLGLRGLRMPSSAWLFELRTQLIDAKYDAQLCVTHPDCHVRRYR 336
            LR L  +R  NL+R+W GLRG+RMPS+AW+ E+R QL+ A  +AQLCV+HPD  V RYR
Sbjct: 252 PLRELSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRHQLLQADVEAQLCVSHPDGEVHRYR 311

Query: 337 DRVFLTPRRPPFDENTGPQPFIWRGEDKLHFPQFSGSLFFDV-----SEVGFDAAWLREQ 391
           +RVFL PRR P DE        W G+ +   P + G+L FD      +  GFD AWL+ Q
Sbjct: 312 ERVFLAPRRMPPDEGA-VATLRWDGQAQWRLPAWYGTLHFDRIGGDDARPGFDPAWLQGQ 370

Query: 392 SLSVCLRSGGERIRLAWNRPAKSLKYHFQNMDIPAWERPYLPLVFAQEQILYAAGIGMDC 451
           SL  C RSGGERIRLA NRPA+SLK  +Q+ D+PAWERPYLPLV+A E +L+AAGIGMDC
Sbjct: 371 SLLACGRSGGERIRLAANRPARSLKQQYQSADVPAWERPYLPLVWAGESLLFAAGIGMDC 430

Query: 452 HAQPKPGEESKEHRIALRWQTD 473
             Q  P   ++  RIALRWQ D
Sbjct: 431 -GQFAPSATAQ--RIALRWQPD 449


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,433,296
Number of extensions: 57878
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 386
Effective length of database: 1,198,455
Effective search space: 462603630
Effective search space used: 462603630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)