BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0104.p
         (214 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311196|ref|YP_003775288.1| 3-methyl-adenine DNA glycosylas...   381   e-107

>gi|300311196|ref|YP_003775288.1| 3-methyl-adenine DNA glycosylase
           II [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score =  381 bits (978), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 182/208 (87%), Positives = 192/208 (92%)

Query: 3   KNNPADPAISVPAYWEDAKAELMKRDRIMRKLIPQFGDLQLTGRGDAFTTLARSIIGQQI 62
           K +  DP++ VPAYWE+AKAELMKRDRIMRK+IPQFGDLQLT RGDAFTTLARS+IGQQI
Sbjct: 6   KASDVDPSLIVPAYWEEAKAELMKRDRIMRKIIPQFGDLQLTVRGDAFTTLARSVIGQQI 65

Query: 63  STKSAQAVWQRFLEACPKCMPAQVIKAGPENLVACGLSKRKAEYILDLANHFKAKTVHPD 122
           STK+A AVWQRFLEACP+C P QVI+ GPE L  CGLSKRKAEYILDLA HFKAKTVHPD
Sbjct: 66  STKAANAVWQRFLEACPRCTPGQVIRTGPEGLAGCGLSKRKAEYILDLAAHFKAKTVHPD 125

Query: 123 KWAEMEDEDVIAEMLQIRGIGRWTAEMFLIFNLLRPNVLPLDDPGLLKGISDSYFSGEPV 182
           KWAEMEDE VIAEM+QIRGIGRWTAEMFLIFNLLRPNVLPLDD GLLKGIS SYFSGEPV
Sbjct: 126 KWAEMEDEAVIAEMIQIRGIGRWTAEMFLIFNLLRPNVLPLDDLGLLKGISISYFSGEPV 185

Query: 183 SRSDAREVAANWEPWRTVATWYLWRSLD 210
           SRSDAREVAANWEPWRTVATWYLWRSLD
Sbjct: 186 SRSDAREVAANWEPWRTVATWYLWRSLD 213


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 692,490
Number of extensions: 26866
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 133
Effective length of database: 1,236,335
Effective search space: 164432555
Effective search space used: 164432555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)