BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0102.p
         (416 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311194|ref|YP_003775286.1| signal peptide protein [Herbasp...   303   2e-83

>gi|300311194|ref|YP_003775286.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 539

 Score =  303 bits (775), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 141/188 (75%), Positives = 165/188 (87%), Gaps = 5/188 (2%)

Query: 7   HTYRNALRGILSKTVILSGLIAAIYSV-----QASEVSDISKLMRNGQYADALVKTDAVL 61
           H  R+ +     KT ++S L+AA+++       ASE+SDI+KLMR GQYA+AL KTDAVL
Sbjct: 12  HGLRDLISKTAHKTAVMSSLVAALFAAPASLAHASEMSDINKLMRAGQYAEALTKTDAVL 71

Query: 62  AKHPRDAQMRFVKGLILAEQNKSAEAIAIFSKLTEDFPDLPEPYNNLAVLYAANGQYDKA 121
           AKHPRDAQ+RF KGLILAEQN+SAEAIA+F+KLTEDFPDLPEPYNNLAVLYAA+GQYDKA
Sbjct: 72  AKHPRDAQLRFTKGLILAEQNRSAEAIAVFTKLTEDFPDLPEPYNNLAVLYAADGQYDKA 131

Query: 122 RTTLDMAIRTNPTYATALENLGDIYAKLASQAYDKALQIDPGSNVPQPKLTLVRTLSGNI 181
           R  LDMA+RTNPTYATALENLGD+YAKLASQAYDKALQIDPG+NVPQPKLTL+R+L+GN 
Sbjct: 132 RAALDMAMRTNPTYATALENLGDVYAKLASQAYDKALQIDPGANVPQPKLTLLRSLNGNT 191

Query: 182 TGGTIPKL 189
           TGGT+P+L
Sbjct: 192 TGGTVPRL 199



 Score =  190 bits (482), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 87/122 (71%), Positives = 101/122 (82%)

Query: 295 KAAESAREEKDKTAVLAAVNNWAKAWSDLDVKSYLAAYGSDFQTPKGETRKEWADERRAR 354
           KA E A  E+DKTAVLAA+N WAKAWSD DV+ YL  Y SDF TPKG +RKEWA+ERRAR
Sbjct: 418 KAKEQASAEQDKTAVLAALNGWAKAWSDKDVRGYLGHYASDFDTPKGASRKEWAEERRAR 477

Query: 355 IEEKGHITVKVEAPQIAIKNDTATVRFRQIYNSNRLTVNSRKTLILTKQGNKWLIKQERS 414
           IE+KG I+VKV    ++I  +TATVR+RQIYNS+RLTV+SRKTLI  KQGN+WLIKQERS
Sbjct: 478 IEDKGRISVKVSNATVSINGNTATVRYRQIYNSDRLTVDSRKTLIFVKQGNRWLIKQERS 537

Query: 415 GG 416
           GG
Sbjct: 538 GG 539


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.308    0.126    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 905,657
Number of extensions: 31265
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 3
Length of query: 416
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 328
Effective length of database: 1,203,190
Effective search space: 394646320
Effective search space used: 394646320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 132 (55.5 bits)