BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0101.p
         (412 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311193|ref|YP_003775285.1| hypothetical protein Hsero_1868...   609   e-175

>gi|300311193|ref|YP_003775285.1| hypothetical protein Hsero_1868
           [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  609 bits (1570), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 302/397 (76%), Positives = 344/397 (86%), Gaps = 9/397 (2%)

Query: 25  CLACVPVATSVASSSAIPPQTLQS--EIRKPDPEALLIEIYKDLGNNRLQEAQAKADALV 82
           CLA +P   SVASSS+IPPQ+  +   + KPDPEALLI+IYKDLG NRL+EAQAKADALV
Sbjct: 3   CLAGLPSVGSVASSSSIPPQSAPAGAPVAKPDPEALLIDIYKDLGANRLREAQAKADALV 62

Query: 83  AAYPHFRLGHLVRGDLLMMHARPVKGFGAMADAPADKLKDLRAEAMVRIKSLQERPNPNL 142
           AAYP FRLGHLVRGDLL+MHARPV+ FGAMAD PADKLK+LR EAMVRI+SLQE+P+PNL
Sbjct: 63  AAYPTFRLGHLVRGDLLLMHARPVRNFGAMADGPADKLKELRDEAMVRIRSLQEKPDPNL 122

Query: 143 IPKPVLQVGDDQKNVLVVDTSRSRLYVYENQGGQLRFITDYYVSQGRYGVNKX------P 196
           IPK VLQVG+DQKNVLVVDT+RSR+YVYENQGG+L+F TD+Y+SQGR+G NK        
Sbjct: 123 IPKAVLQVGEDQKNVLVVDTTRSRMYVYENQGGELKFQTDFYISQGRFGANKSKSGDQRT 182

Query: 197 PIGVYYVNARIPGPKLPDFYGTGALPLNYPNEWDKRNGRSGSGIWLHGTPSDNFSRPPLS 256
           PIGVYYVN RIPGPKLPDFYGTGALPL+YPNEWDKRNGRSG GIWLHGTPSDNFSRPPLS
Sbjct: 183 PIGVYYVNNRIPGPKLPDFYGTGALPLSYPNEWDKRNGRSGYGIWLHGTPSDNFSRPPLS 242

Query: 257 SDGCVVLANPDLQSLYSTAEVGKTVVVISDGIQFVNKAEWDKDRGSAGKFMDQWQQDMEA 316
           SDGCVVLANPDLQSLYSTAEVGKTVVVIS  +QFV+K EW + R +A   ++QW Q +E 
Sbjct: 243 SDGCVVLANPDLQSLYSTAEVGKTVVVISQHVQFVDKNEWARQRDAASAILEQWGQSLEN 302

Query: 317 TDADKVLANYSPAFRSNLGESLSTWFSRQQKSLNGARPSSVKVRDLSLYRYPGKDE-LIV 375
            D +KVL+ YSP FRS  GESL+TWF RQQKSLNGAR +SVK+RD+SL+RYPG  E +IV
Sbjct: 303 ADPEKVLSYYSPEFRSAQGESLATWFGRQQKSLNGARYTSVKLRDVSLFRYPGTPEDMIV 362

Query: 376 STFTQETAVGKNKNAIRKRQYWQKEGSRWKIVYEGAA 412
           STFTQE+AVGK+KNAIRKRQYW +EGS+WKI+YEG A
Sbjct: 363 STFTQESAVGKSKNAIRKRQYWVREGSQWKIIYEGNA 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,299,078
Number of extensions: 55680
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 324
Effective length of database: 1,203,190
Effective search space: 389833560
Effective search space used: 389833560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)