BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0100.p
         (194 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311192|ref|YP_003775284.1| peptidyl-prolyl cis/trans isome...   295   1e-81
gi|300311191|ref|YP_003775283.1| peptidyl-prolyl cis/trans isome...   228   2e-61

>gi|300311192|ref|YP_003775284.1| peptidyl-prolyl cis/trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  295 bits (756), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 147/191 (76%), Positives = 165/191 (86%), Gaps = 5/191 (2%)

Query: 5   LSRRKLLQCIAAISLSGA-AVMAHAADAPRVLLKTSMGDITLELDADKAPVTVANFLQYV 63
           LSRR LL+  AA+SLS A AV A AADAPRVLLKTSMGDIT+EL+ +KAPV+V NFL+YV
Sbjct: 3   LSRRHLLRMAAALSLSTALAVPALAADAPRVLLKTSMGDITVELNPEKAPVSVENFLKYV 62

Query: 64  KKGQYNGTIFHRVIKGFMIQGGGFDKDMREKPTDAPIRNEARNGLKNDAYTIAMARTSNP 123
           KKGQYNGT+FHRVI GFMIQGGG D+++REKPTDAPI+NEA NGLKN+ YTIAMARTS P
Sbjct: 63  KKGQYNGTVFHRVINGFMIQGGGMDQNLREKPTDAPIKNEANNGLKNEVYTIAMARTSAP 122

Query: 124 HSAAAQFFINVNNNQPLDYPSRDGWGYAVFGKVVQGADVVDKIKQVRTGSSGMYDDVPVT 183
           HSA AQFFINV NN+ LDYP +DGWGYAVFGKVV G +VVDKIKQVRTG+     DVP T
Sbjct: 123 HSATAQFFINVANNRFLDYPGQDGWGYAVFGKVVAGTEVVDKIKQVRTGAG----DVPST 178

Query: 184 PVVIQSATLVK 194
           PVVI+SATLVK
Sbjct: 179 PVVIESATLVK 189


>gi|300311191|ref|YP_003775283.1| peptidyl-prolyl cis/trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score =  228 bits (582), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/160 (66%), Positives = 126/160 (78%)

Query: 34  VLLKTSMGDITLELDADKAPVTVANFLQYVKKGQYNGTIFHRVIKGFMIQGGGFDKDMRE 93
           VLL T+ G I +ELDA+KAP TV NFL YV  G YNGTIFHRVI GFMIQGGGF+  M++
Sbjct: 3   VLLTTNHGTIKIELDAEKAPKTVENFLAYVNAGHYNGTIFHRVIDGFMIQGGGFEPGMKQ 62

Query: 94  KPTDAPIRNEARNGLKNDAYTIAMARTSNPHSAAAQFFINVNNNQPLDYPSRDGWGYAVF 153
           K T  PI NEA+NGLKN+ YT+AMART+ PHSA+AQFFINV NN  LDYP +DGWGY VF
Sbjct: 63  KETREPIENEAKNGLKNEPYTLAMARTAAPHSASAQFFINVKNNSFLDYPGQDGWGYCVF 122

Query: 154 GKVVQGADVVDKIKQVRTGSSGMYDDVPVTPVVIQSATLV 193
           GKVV+G +VVDKIK V+T  +GM+ DVP   VVI+ A +V
Sbjct: 123 GKVVEGTEVVDKIKGVKTTRAGMFADVPAEDVVIEKAEVV 162


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 586,580
Number of extensions: 23557
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 2
Length of query: 194
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 114
Effective length of database: 1,241,070
Effective search space: 141481980
Effective search space used: 141481980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)