BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0099.p
         (162 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311191|ref|YP_003775283.1| peptidyl-prolyl cis/trans isome...   306   7e-85
gi|300311192|ref|YP_003775284.1| peptidyl-prolyl cis/trans isome...   220   4e-59

>gi|300311191|ref|YP_003775283.1| peptidyl-prolyl cis/trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score =  306 bits (783), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 142/162 (87%), Positives = 154/162 (95%)

Query: 1   MAVLFTTNHGTFTVELEAEKAPKTVENFLAYVNSGHYSGTIFHRVIDGFMIQGGGFEPGM 60
           MAVL TTNHGT  +EL+AEKAPKTVENFLAYVN+GHY+GTIFHRVIDGFMIQGGGFEPGM
Sbjct: 1   MAVLLTTNHGTIKIELDAEKAPKTVENFLAYVNAGHYNGTIFHRVIDGFMIQGGGFEPGM 60

Query: 61  KQKPTNDPVENEAKNGLKNEPYTLAMARTSAPHSASAQFFVNVKNNSFLDFPGQDGWGYC 120
           KQK T +P+ENEAKNGLKNEPYTLAMART+APHSASAQFF+NVKNNSFLD+PGQDGWGYC
Sbjct: 61  KQKETREPIENEAKNGLKNEPYTLAMARTAAPHSASAQFFINVKNNSFLDYPGQDGWGYC 120

Query: 121 VFGKVTEGTDVIDKIKNVKTTRSGMFADVPVEDVVIEKAEVV 162
           VFGKV EGT+V+DKIK VKTTR+GMFADVP EDVVIEKAEVV
Sbjct: 121 VFGKVVEGTEVVDKIKGVKTTRAGMFADVPAEDVVIEKAEVV 162


>gi|300311192|ref|YP_003775284.1| peptidyl-prolyl cis/trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  220 bits (561), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 104/160 (65%), Positives = 124/160 (77%), Gaps = 4/160 (2%)

Query: 3   VLFTTNHGTFTVELEAEKAPKTVENFLAYVNSGHYSGTIFHRVIDGFMIQGGGFEPGMKQ 62
           VL  T+ G  TVEL  EKAP +VENFL YV  G Y+GT+FHRVI+GFMIQGGG +  +++
Sbjct: 33  VLLKTSMGDITVELNPEKAPVSVENFLKYVKKGQYNGTVFHRVINGFMIQGGGMDQNLRE 92

Query: 63  KPTNDPVENEAKNGLKNEPYTLAMARTSAPHSASAQFFVNVKNNSFLDFPGQDGWGYCVF 122
           KPT+ P++NEA NGLKNE YT+AMARTSAPHSA+AQFF+NV NN FLD+PGQDGWGY VF
Sbjct: 93  KPTDAPIKNEANNGLKNEVYTIAMARTSAPHSATAQFFINVANNRFLDYPGQDGWGYAVF 152

Query: 123 GKVTEGTDVIDKIKNVKTTRSGMFADVPVEDVVIEKAEVV 162
           GKV  GT+V+DKIK V+T       DVP   VVIE A +V
Sbjct: 153 GKVVAGTEVVDKIKQVRTGA----GDVPSTPVVIESATLV 188


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 491,373
Number of extensions: 19161
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 2
Length of query: 162
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 84
Effective length of database: 1,250,540
Effective search space: 105045360
Effective search space used: 105045360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)