BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0097.p (259 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311189|ref|YP_003775281.1| serine O-acetyltransferase [Her... 345 2e-96 gi|300311650|ref|YP_003775742.1| serine O-acetyltransferase [Her... 145 3e-36 gi|300310909|ref|YP_003775001.1| serine O-acetyltransferase [Her... 132 2e-32 gi|300311326|ref|YP_003775418.1| serine O-acetyltransferase [Her... 75 4e-15 >gi|300311189|ref|YP_003775281.1| serine O-acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 250 Score = 345 bits (886), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 175/229 (76%), Positives = 191/229 (83%), Gaps = 2/229 (0%) Query: 1 MFSRLREDISSIIERDPAARNAWEVLTCYPGLHAVVLHRVANKCWVLGLKWLGRFISQLA 60 MFSRLREDI+SI RDPAARN+WEVLTCYPGLHA++LHR A CW LKWLGRFISQL Sbjct: 1 MFSRLREDIASIRARDPAARNSWEVLTCYPGLHALILHRWAKACWQAQLKWLGRFISQLG 60 Query: 61 RWFTGIEIHPGATIGRRVFIDHGFGVVIGETAEIGDDCTIYQGVTLGGTSLNKGAKRHPT 120 R TGIEIHPGATIGRRVFIDHG GVVIGETA +GDD TIYQGVTLGGTSL KGAKRHPT Sbjct: 61 RMLTGIEIHPGATIGRRVFIDHGMGVVIGETAIVGDDSTIYQGVTLGGTSLVKGAKRHPT 120 Query: 121 LGRGVIIGAGAQVLGGFTVGDGAKVGSNAVVVKEVPPGATAIGNPARVV-RKEVPDPREH 179 LGRGVIIGAGA+VLGGFTVGDGAKVGSNAVV KEVP G TA+GNPAR++ R V + Sbjct: 121 LGRGVIIGAGAKVLGGFTVGDGAKVGSNAVVTKEVPAGTTAVGNPARIIERNTVSAEPDQ 180 Query: 180 AAARMFAAYGVTPNGDDPLSKALHGLIDQGXFLLRAV-FALNAIQGSSI 227 AAAR+FAAYGV PNGDDPLSKALHGLI+Q + + L A+QG+ I Sbjct: 181 AAARLFAAYGVMPNGDDPLSKALHGLINQVAAQEQQLQVMLAALQGAGI 229 >gi|300311650|ref|YP_003775742.1| serine O-acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 307 Score = 145 bits (366), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 80/165 (48%), Positives = 104/165 (63%), Gaps = 8/165 (4%) Query: 3 SRLREDISSIIERDPAARNAWEVLTCYPGLHAVVLHRVANKCWVLGLKWLGRFISQLARW 62 S+L D+ + + DPAAR+ EVL CYPG A++ +R+A++ + LGL L R I++LA Sbjct: 124 SQLDTDVLAAYQGDPAARSVDEVLLCYPGALAMIHYRLAHRLYQLGLPLLARIIAELAHA 183 Query: 63 FTGIEIHPGATIGRRVFIDHGFGVVIGETAEIGDDCTIYQGVTLGGT--------SLNKG 114 TGI+IHPGA IG FIDHG GVVIGETA IG++ IYQ VTLG L KG Sbjct: 184 ATGIDIHPGAQIGTGFFIDHGTGVVIGETAVIGNNVRIYQAVTLGAKRFPTDADGKLEKG 243 Query: 115 AKRHPTLGRGVIIGAGAQVLGGFTVGDGAKVGSNAVVVKEVPPGA 159 RHP + V+I AGA +LG +G GA +G N + +VP GA Sbjct: 244 RARHPIVEDDVVIYAGATILGRIRLGRGAVIGGNVWLTHDVPAGA 288 >gi|300310909|ref|YP_003775001.1| serine O-acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 311 Score = 132 bits (333), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 73/164 (44%), Positives = 94/164 (57%), Gaps = 8/164 (4%) Query: 5 LREDISSIIERDPAARNAWEVLTCYPGLHAVVLHRVANKCWVLGLKWLGRFISQLARWFT 64 L DI + DPAA + E+L CYPG A++ HR+A+ LG L R I+ +A T Sbjct: 135 LVSDIQAAYHGDPAASSISEILLCYPGTTAIIYHRLAHALHQLGAPLLARLIADIAHSAT 194 Query: 65 GIEIHPGATIGRRVFIDHGFGVVIGETAEIGDDCTIYQGVTLGGT--------SLNKGAK 116 GI+IHP A IG FIDHG GVVIGET IG + +YQ VTLG SL KG Sbjct: 195 GIDIHPAAQIGPSFFIDHGTGVVIGETTIIGRNVRLYQAVTLGAKRFPQEPDGSLVKGIP 254 Query: 117 RHPTLGRGVIIGAGAQVLGGFTVGDGAKVGSNAVVVKEVPPGAT 160 RHP + V++ AGA +LG T+G G+ +G N + VP G+ Sbjct: 255 RHPIVEDDVVVYAGATLLGRITIGRGSVIGGNVWLTHSVPAGSN 298 >gi|300311326|ref|YP_003775418.1| serine O-acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 188 Score = 75.5 bits (184), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 52/128 (40%), Positives = 69/128 (53%), Gaps = 11/128 (8%) Query: 52 LGRFISQLARWFT--------GIEIHPGATIGRRVFIDHGFGVVIGETAEIGDDCTIYQG 103 L R I+ L W GI + A IG + I H + + IG CT+ QG Sbjct: 45 LSRKIANLFYWLAFRLVETVFGISLPRTARIGPGLRIWHFGNIFLHGDVVIGAGCTLRQG 104 Query: 104 VTLGGTSLNKGAKRHPTLGRGVIIGAGAQVLGGFTVGDGAKVGSNAVVVKEVPPGATAIG 163 VT+G + P LG V +GA AQVLG +GDG KVG+ +VV+ +VPPGATA+G Sbjct: 105 VTIGN---RREGGPVPVLGDNVELGAYAQVLGAVHLGDGCKVGAMSVVLDDVPPGATAVG 161 Query: 164 NPARVVRK 171 PARV+ + Sbjct: 162 APARVIAR 169 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 926,162 Number of extensions: 43399 Number of successful extensions: 182 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 5 Length of query: 259 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 176 Effective length of database: 1,226,865 Effective search space: 215928240 Effective search space used: 215928240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)