BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0088.p
         (156 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312243|ref|YP_003776335.1| exported extracellular alpha-he...   203   7e-54

>gi|300312243|ref|YP_003776335.1| exported extracellular alpha-helical
            protein [Herbaspirillum seropedicae SmR1]
          Length = 1938

 Score =  203 bits (516), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 98/152 (64%), Positives = 122/152 (80%)

Query: 1    VPLNDSLTSFRIVAVAESGAGLFGTGTASIRSSQDVQVISGLPPLVREGDQFSAMVTVRN 60
            VPLND+LTSFRIVA+AE+G   FGTG+ SIRS+QDVQVISGLPPLVREGD F+  VTVRN
Sbjct: 1270 VPLNDALTSFRIVAIAENGISDFGTGSISIRSTQDVQVISGLPPLVREGDSFNGAVTVRN 1329

Query: 61   TTTRAMQIRLNAKASGGTPASMIALQDKDVAIPAGEAREVAWPVMVPADVSQLSWEIGAQ 120
            TTT  M I++ A+A GGT AS + L +++V I AG++ EV WPV  P  ++QL+WEI AQ
Sbjct: 1330 TTTHDMTIKVAARAQGGTAASTLTLPEREVKIAAGQSAEVMWPVQTPEGINQLAWEISAQ 1389

Query: 121  EQSASPAKDSIRFVQRVLPAIPVTVQQATLFQ 152
            EQ    A+D+++F QRV+PA+PVTVQQATLFQ
Sbjct: 1390 EQGGQKARDAMKFTQRVVPAVPVTVQQATLFQ 1421


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 476,792
Number of extensions: 18824
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,250,540
Effective search space: 97542120
Effective search space used: 97542120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)