BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0087.p
         (813 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312243|ref|YP_003776335.1| exported extracellular alpha-he...  1134   0.0  

>gi|300312243|ref|YP_003776335.1| exported extracellular alpha-helical
            protein [Herbaspirillum seropedicae SmR1]
          Length = 1938

 Score = 1134 bits (2933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/781 (70%), Positives = 639/781 (81%), Gaps = 15/781 (1%)

Query: 1    VIAWLTRLNRYHERWGDTSGKTPDTRAIGLLAKEPGVKTLNLPALSDAKDGERPFEVVGI 60
            VIAWLTRLN+YHE+WGD   K  DTR++ LLAKEPG K L+LPA  DAK+GE PFEV+GI
Sbjct: 407  VIAWLTRLNKYHEKWGDP--KKVDTRSVSLLAKEPGAKKLDLPAQKDAKEGEWPFEVIGI 464

Query: 61   PLKDPGFYVVELESQKLGASLLGKPAPMYVRTSTLVTNLSVHVKLGRENNAVWVTRLDTA 120
            PLKDPGFYVVELESQKLGASLLGKP PMYVRTS LVTNLSVHVKLGR N AVWVTRLD A
Sbjct: 465  PLKDPGFYVVELESQKLGASLLGKPQPMYVRTSALVTNLSVHVKLGRANGAVWVTRLDDA 524

Query: 121  KPVADADVRISNCKGDEIWRGKTNAIGVATIAKPLEDVCA-MGQNQDGA--INGLFVSAR 177
            KPVADA++R+SNC G +IW+GKTNA GVA +   LED CA  G + D A  INGLFVSAR
Sbjct: 525  KPVADAEIRVSNCDGAQIWQGKTNASGVAMMPA-LEDACANRGYSPDNADKINGLFVSAR 583

Query: 178  KTDEQGRADMAFALTSWNDGIESWRFNLLTDRSASSSARAHTIFDRTLFRAGETVSMKHE 237
            KTDE+GR DMAFALTSWN+GIESWRFNL TD   S++ RA T+FDRTLFRAGETVSMKH 
Sbjct: 584  KTDEKGRQDMAFALTSWNEGIESWRFNLPTDMDKSATVRATTVFDRTLFRAGETVSMKHV 643

Query: 238  FRLESMNGFALAGKDKLPTRVRIIHQGSGQEFQFALNWRNQKNAETVFSIPKEAKLGSYE 297
             R E++ GF L  K+ LPTRVRI H GSGQ++QF L WR  K+AET F +PK+AKLGSYE
Sbjct: 644  IRTETLQGFGLMRKEDLPTRVRISHLGSGQQYQFPLTWRGNKSAETTFVLPKQAKLGSYE 703

Query: 298  VLLDRGA--AKAGSETNGDGDGDGEEGGYAPGTYSSGSFRVEEFRLPLMQGRITPVTGKG 355
            V+LD+G   A A +E     D    EGGY  GTY +GSFRVEEFRLPLMQGRITP  G  
Sbjct: 704  VVLDQGKVDANASAEPTEQSDDGDYEGGYGRGTYVTGSFRVEEFRLPLMQGRITPPKG-- 761

Query: 356  KGDALVAPKEVPLDVQLNYINGGGASGQTVRVTSLMRAKPVSFPAYEGYSFDAGNSGGED 415
               A VA KE+PLD+QLNYINGG A+ Q V+V+SL+R++ ++   Y+G+SFDA  S  +D
Sbjct: 762  ---AQVAVKEMPLDLQLNYINGGAAANQAVQVSSLLRSRSLNIAGYDGFSFDAPRS--DD 816

Query: 416  GAGNDDQKIVADKLPVTLDKNGAGRTTVKSLPVLKTPRELLTEMTYNDPNGEIQTVSNVT 475
             +  DDQKIVADKL +TLDKNGAGR T+  LP L+ P+ELLTEMTY+DPNGE+QT+SNVT
Sbjct: 817  DSNADDQKIVADKLAITLDKNGAGRATISKLPALQRPQELLTEMTYSDPNGEVQTISNVT 876

Query: 476  TLWPSAVVIGIKGGDWVSVKKKLALTMVALNAAGQPQADVPVEISGESKQTNSHRKRMVG 535
             LWPSAVV+G++ G+WVSVKKKL LT V LN AGQPQA VPVEI G +++TNSHRKRMVG
Sbjct: 877  PLWPSAVVVGLRTGNWVSVKKKLTLTAVTLNTAGQPQAGVPVEIRGIARKTNSHRKRMVG 936

Query: 536  GFYAYENTRSSQNLGTLCSGKTDKHGVLICEVSLTEAGNVELTASGKDANGNASFAKTSV 595
            GFYAYEN  S Q+LG LCSGK+D+HG+  C+  L+EAGNVEL AS KD NGNA+ A++SV
Sbjct: 937  GFYAYENDESKQDLGKLCSGKSDQHGMFTCDTELSEAGNVELIASAKDGNGNAAAARSSV 996

Query: 596  WVTRQGELWFDGENQDRIDILPEKKTYQPGETARFQVRMPFRYATALVAVEREGIIDTQV 655
            WVT +GE+WFDGENQDRIDILPEKK YQPGETA FQVRMPFR ATALVAVEREG+IDT+V
Sbjct: 997  WVTGRGEVWFDGENQDRIDILPEKKNYQPGETANFQVRMPFRSATALVAVEREGVIDTRV 1056

Query: 656  VQLNGQDPTISLPVKGGFAPNVYVSVLAVRGRMREVPWYSFFTWGWKEPINWWHEFKEYQ 715
            VQL+GQDPTIS+P+K  + PNVYVSVLAVRGRMREVPWYSFF WGWKEPINWWHEF+EYQ
Sbjct: 1057 VQLSGQDPTISVPMKAEYGPNVYVSVLAVRGRMREVPWYSFFIWGWKEPINWWHEFREYQ 1116

Query: 716  APGTMVDLAKPAYKFGIAEIAVGSGAHVLKVAVAADKASYPIRSVAKVNVQVTQPDGKPX 775
             PG +VDL+KPA+KFGIAE+ VG   H L+VAV+ DK +YPIR++AKV VQV  P+GKP 
Sbjct: 1117 GPGPIVDLSKPAWKFGIAEVNVGDAGHRLQVAVSTDKPTYPIRAIAKVQVQVKLPNGKPA 1176

Query: 776  A 776
            A
Sbjct: 1177 A 1177


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,602,574
Number of extensions: 112783
Number of successful extensions: 301
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 1
Length of query: 813
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 720
Effective length of database: 1,179,515
Effective search space: 849250800
Effective search space used: 849250800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 135 (56.6 bits)