BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0086.p
         (402 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312243|ref|YP_003776335.1| exported extracellular alpha-he...   513   e-146

>gi|300312243|ref|YP_003776335.1| exported extracellular
           alpha-helical protein [Herbaspirillum seropedicae SmR1]
          Length = 1938

 Score =  513 bits (1321), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 253/377 (67%), Positives = 297/377 (78%), Gaps = 4/377 (1%)

Query: 5   LALLLSPAIDAGAAGVAGFSPQGEVAQIRQARATFSEPIIKFGDPKAAAPFDVNCAVAGT 64
           ++LL      A +A V  FSPQGEV +IRQ RA FSE ++KFGDPKAA+PFD +CAVAGT
Sbjct: 14  MSLLPVKPAQAASATVQSFSPQGEVQRIRQVRARFSESMVKFGDPKAASPFDADCAVAGT 73

Query: 65  SRWADGKNWVYDFERDLPPGTRCSFTLKPGVKAVSGAALSGKSVFQFSTGGPAVVRHMP- 123
           +RWAD +NWVYDFERDLPPGTRCSFTL+   K+V+G ++ GK+ FQFSTGGPAV R  P 
Sbjct: 74  ARWADDRNWVYDFERDLPPGTRCSFTLRAEAKSVAGNSVGGKTRFQFSTGGPAVSRVQPY 133

Query: 124 SGEEIEEEQAFILFQNGAANQDTVRDHLYCEAEGVHERIPVKFVADATRKQLLQEFAKKI 183
           SG +I E+QAFILFQNG A + +VR HLYCEAEG++ERIP K V +A RK LLQ+FAK +
Sbjct: 134 SGAQIAEDQAFILFQNGPATEPSVRQHLYCEAEGINERIPAKAVGEADRKALLQQFAKGV 193

Query: 184 DPATVTIVQCQQRLPNDATVRLTWDKGIATPN--GIATTIPQTFKFKVRKEFTASLSCER 241
           DPA+VTIVQCQQRLPN+A V+L WD+GIA  N   + T+ PQ F F+VR EF ASLSC+R
Sbjct: 194 DPASVTIVQCQQRLPNEAHVKLVWDRGIAAANAPAVVTSQPQVFNFQVRSEFAASLSCQR 253

Query: 242 ENANAACSPIRPVTMSFSSPVPRKLAEAVELKSSNGKLKPFFEKGNVDDTVYGLTFKPPF 301
           ENANAACSPI PVT+SFS+PVPRKLAE V + ++ GK+KP  E G+ D+ V  L FKPPF
Sbjct: 254 ENANAACSPILPVTLSFSAPVPRKLAEQVVMNATTGKIKPTLE-GDKDEAVRELRFKPPF 312

Query: 302 AENGEFTINLPSGFKDESGRALGNASAFPLKSRTAGYPPLAKFPAAPFGIIELNADATLP 361
            E  +FTI+LPSGFKDE GR L NA AFPLKS  A +PPLAKFPAAPFGIIELNAD TLP
Sbjct: 313 PEKSDFTISLPSGFKDEDGRTLANAGAFPLKSALADFPPLAKFPAAPFGIIELNADPTLP 372

Query: 362 VTLRRVEANLLARGVLG 378
           VTLRRVEA L  RG  G
Sbjct: 373 VTLRRVEAGLQVRGKDG 389


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,263,476
Number of extensions: 54367
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 315
Effective length of database: 1,207,925
Effective search space: 380496375
Effective search space used: 380496375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)