BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0076.p
         (439 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312250|ref|YP_003776342.1| transmembrane protease [Herbasp...   660   0.0  

>gi|300312250|ref|YP_003776342.1| transmembrane protease
           [Herbaspirillum seropedicae SmR1]
          Length = 450

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/450 (79%), Positives = 388/450 (86%), Gaps = 11/450 (2%)

Query: 1   MLVSLFKKLGIKFSLNDPQWGRGSQDDNNRQNQNNGNNGKKPD------DGPPDLDQLWR 54
           MLVSLF+K+G+KFSLNDPQWGRGSQ+DN     N  N  K+P+      DGPPDLDQLWR
Sbjct: 1   MLVSLFRKIGVKFSLNDPQWGRGSQNDNRDNQNNGNNGDKRPEKPSGNNDGPPDLDQLWR 60

Query: 55  DFNQRLSRLFGKRGGGGSDNGDGGGFNRGD-IKGAGIGAGVIAVIVAFLWLASGFFIVQE 113
           DFNQRLS LFG++GGGGS +G  GG      +KGAGIG GVIAVIVAFLWLASGFFIVQE
Sbjct: 61  DFNQRLSGLFGRKGGGGSSDGGNGGGFNRGDVKGAGIGVGVIAVIVAFLWLASGFFIVQE 120

Query: 114 GQTAVVMTFGKYSHTTLPGFNWRWPYPLQSHEIVNVSQVRTAEIGYRSNAKNKQLKEALM 173
           GQTAVV TFG+YSHTTLPGFNWRWPYP+Q HEIVN+SQVRTAEIGYR N +NKQLKE+LM
Sbjct: 121 GQTAVVTTFGRYSHTTLPGFNWRWPYPIQGHEIVNMSQVRTAEIGYRGNVRNKQLKESLM 180

Query: 174 LTDDENIIDIQFAVQYKLKNAAEWLFNNRDQDETVRQVAETAIREIVGRSKMDFVLYEGR 233
           LTDDENIIDIQFAVQYKLKNAAEWLFNNRD D++VRQVAETAIREIVGRSKMDFVLYEGR
Sbjct: 181 LTDDENIIDIQFAVQYKLKNAAEWLFNNRDPDDSVRQVAETAIREIVGRSKMDFVLYEGR 240

Query: 234 EKVALDVGQLMQQILDRYKSGVQITNVTMQGVQPPEQVQAAFDDAVKAGQDRERQKNEGQ 293
           EKVALDV Q MQQILDRYKSGVQITNVTMQGVQPPEQVQAAFDDAVKAGQDRER KNEGQ
Sbjct: 241 EKVALDVSQRMQQILDRYKSGVQITNVTMQGVQPPEQVQAAFDDAVKAGQDRERLKNEGQ 300

Query: 294 AYANDVIPKASGAASRLLEEAEAYRSRIVANAEGDAARFKQVLEEYQKAPAVTRDRMYLE 353
           AYANDVIP+ASGAASRLLEEAEAYRSR+VANAEGDA+RF QV E Y KAPAVTRDRMY+E
Sbjct: 301 AYANDVIPRASGAASRLLEEAEAYRSRVVANAEGDASRFTQVQEAYAKAPAVTRDRMYIE 360

Query: 354 TMQQIFSNTTKVMVDAKSGNNLLYLPLDKLIQQS----DNAAAAAKPATAPAGSSTASPT 409
           TMQQIF+NTTKVMVDAKSG+NLLYLPLDKLIQQ+      A   A  A APA S+    +
Sbjct: 361 TMQQIFANTTKVMVDAKSGSNLLYLPLDKLIQQTGPEAAAAGKPAASAAAPAASAANPAS 420

Query: 410 LPGTDPVYSTDVQRDSRNRDARDSRDREVR 439
             G D VYS+++ RD RNRD R+SR+REVR
Sbjct: 421 NAGNDTVYSSELMRDMRNRDPRESREREVR 450


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 971,174
Number of extensions: 33010
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 351
Effective length of database: 1,203,190
Effective search space: 422319690
Effective search space used: 422319690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)