BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0073.p
         (248 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312253|ref|YP_003776345.1| GTP-binding protein [Herbaspiri...   461   e-131

>gi|300312253|ref|YP_003776345.1| GTP-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 447

 Score =  461 bits (1187), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 220/248 (88%), Positives = 239/248 (96%)

Query: 1   LLGEERVIAFDMPGTTRDSIEIPFERDGKQYTLIDTAGIRRRGKVFEAIEKFSVVKTLQS 60
           LLGEERVIAFDMPGTTRDSIEIPFER+G+ YTLIDTAGIRRRGKVFEAIEKFSVVKTL+S
Sbjct: 200 LLGEERVIAFDMPGTTRDSIEIPFEREGRHYTLIDTAGIRRRGKVFEAIEKFSVVKTLKS 259

Query: 61  ISETNVVLLLLDAQQDISEQDAHIAGFVLESGRALVVGVNKWDGLQSDRRDEIKMDLERK 120
           IS+ NVVLLLLDAQQDISEQDAHIAGFVLESGRALVVGVNKWDG++SD+R++IKMDLERK
Sbjct: 260 ISDANVVLLLLDAQQDISEQDAHIAGFVLESGRALVVGVNKWDGMESDQRNQIKMDLERK 319

Query: 121 LSFLSFAKFHFISALKSTGIGPVMKSIDSAYAAAMSNLTTPKLTRALIEAVEHQQPRRKG 180
           L+FLSFAKFHFISALKSTGIGP+MKSIDSAYAAAM+ L+TP+LTRAL EA+EHQQPRRKG
Sbjct: 320 LNFLSFAKFHFISALKSTGIGPLMKSIDSAYAAAMAKLSTPRLTRALEEALEHQQPRRKG 379

Query: 181 SIRPKLRYAHQGGMNPPIVVIHGNALEGVDDSYKRYLEKHFRETFSLVGTPLRIEFRSSK 240
           SIRPKLRYAHQGG NPP+VVIHGNALE +DD+YKRYLEKHFRETFSLVGTPLRIEFRS K
Sbjct: 380 SIRPKLRYAHQGGQNPPVVVIHGNALEAIDDNYKRYLEKHFRETFSLVGTPLRIEFRSGK 439

Query: 241 NPFARPDK 248
           NPF R +K
Sbjct: 440 NPFIRQEK 447


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 731,382
Number of extensions: 27491
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,226,865
Effective search space: 202432725
Effective search space used: 202432725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)