BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0071.p
         (390 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312254|ref|YP_003776346.1| lipoprotein transmembrane prote...   538   e-154

>gi|300312254|ref|YP_003776346.1| lipoprotein transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  538 bits (1385), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 269/383 (70%), Positives = 315/383 (82%), Gaps = 1/383 (0%)

Query: 9   SKRTAALAIKLSALATVALLSGCSLFSSKKEVNPPAALVEFKQTLRTQTVWTASVGKAGV 68
           S+R   +A+KL+A+A V  LSGCS FSSKK  NPPA LVEF Q LR QT W+ SVGKAG 
Sbjct: 17  SRRAGKMALKLAAVAAVVALSGCSWFSSKKNPNPPAPLVEFTQKLRVQTAWSVSVGKAGN 76

Query: 69  FQFSPVFAGGSVFAAGADGAVVRLNASNGQTVWRVNAGSSLTAGVGSDGNVVAVVGEKGV 128
           FQFSPV+A GS+FAAG DG VVR+NA  GQT+WR     SLTAGVGSDG+ V VVGEKG 
Sbjct: 77  FQFSPVYAAGSIFAAGNDGTVVRINAQTGQTLWRARTDMSLTAGVGSDGSTVVVVGEKGR 136

Query: 129 VQAFDGN-GKSLWKAQAPSEVLSAPVVGSGLVLVRSIDNRVTAFDAENGTRRWTVLRPLP 187
           +QAFD N GK  W AQA SEVLSAP VG GLV++RSIDNRVTA+DA++G +RW V R +P
Sbjct: 137 IQAFDANTGKPTWNAQAASEVLSAPAVGEGLVVIRSIDNRVTAYDADSGNQRWMVQRNVP 196

Query: 188 ALTLRTAPGIVLDSQTAYVALPGGRLSALALNNGGPRWEVAVGDPKGTTELERIADVSGV 247
           +LTLR APGIV+ SQTA+VALPGGRLSALALNNGGPRWEV VGDP+GTTELERI+DVSGV
Sbjct: 197 SLTLRNAPGIVIGSQTAFVALPGGRLSALALNNGGPRWEVPVGDPRGTTELERISDVSGV 256

Query: 248 PGLGVRDVCAVAYQGRIGCFDVANGNVRWAKDFSSESGLTLDDRFVFSADDKGGVTEFAR 307
           P LG RD+CAVAYQGRIGCFD+ NGNVRW K+FSS+ G+TLDD +V++AD  G VTEF+R
Sbjct: 257 PALGSRDICAVAYQGRIGCFDLLNGNVRWIKEFSSDVGVTLDDSYVYAADVGGIVTEFSR 316

Query: 308 DTGTALWRNAKLAYRRLSPPIAVGKAVAVGDYQGYIHFLSRDDGAFVARTSTDGSPIQVT 367
           DTG  +WRN +L  R+LS PI  GKAVAVGDY+GYIHFLSR+DG+FVAR STDGSPIQ  
Sbjct: 317 DTGAVVWRNERLKNRQLSSPIGAGKAVAVGDYEGYIHFLSREDGSFVARLSTDGSPIQAP 376

Query: 368 PIAAGQAVVFQTQAGTVVALAAE 390
           P++ G +VVFQT++GTVV++  E
Sbjct: 377 PVSTGSSVVFQTKSGTVVSVVTE 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,192,363
Number of extensions: 51270
Number of successful extensions: 202
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 303
Effective length of database: 1,207,925
Effective search space: 366001275
Effective search space used: 366001275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)