BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0069.p
         (450 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312256|ref|YP_003776348.1| histidyl-tRNA synthetase [Herba...   828   0.0  
gi|300312248|ref|YP_003776340.1| ATP phosphoribosyltransferase r...    73   5e-14

>gi|300312256|ref|YP_003776348.1| histidyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score =  828 bits (2140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/438 (89%), Positives = 416/438 (94%), Gaps = 3/438 (0%)

Query: 1   MSENKKIEKIVGVKGMNDILPADAPLWELFENTVHSVLKSYGFQQIRTPIVEPTALFSRG 60
           MSE KK+EKIVGVKGMNDILPADAPLWELFENTV SVLKSYGFQQIRTPIVEPTALF+RG
Sbjct: 1   MSEQKKVEKIVGVKGMNDILPADAPLWELFENTVQSVLKSYGFQQIRTPIVEPTALFARG 60

Query: 61  LGEVTDIVEKEMYSFTDSMNGDNLTLRPESTASVVRAALEHNLTYDGPKRLWYAGPMFRH 120
           LGEVTDIVEKEMYSFTDSMNGDNLTLRPE+TA VVRAALEHNLTYDGPKRLWY GPMFRH
Sbjct: 61  LGEVTDIVEKEMYSFTDSMNGDNLTLRPENTAGVVRAALEHNLTYDGPKRLWYVGPMFRH 120

Query: 121 ERPQRGRYRQFHQVGAEALGFTGPDIDAELIMMCQRLWDDLGLEDIRLELNSIGDAEERS 180
           ERPQRGRYRQFHQVGAEA+GF+GPDIDAELIMMCQRLWDDLGL DIRLELNSIG+AEER+
Sbjct: 121 ERPQRGRYRQFHQVGAEAVGFSGPDIDAELIMMCQRLWDDLGLSDIRLELNSIGNAEERN 180

Query: 181 KHRADLIAYFEQHRELLDADAQRRLHSNPLRILDTKNPTMQGMVNGAPKLLDYLGEESRA 240
           KHRADLIAYFEQH++LLD DAQRRLH+NPLRILDTKNP MQ MVN APKLLDYLGEESRA
Sbjct: 181 KHRADLIAYFEQHKDLLDTDAQRRLHANPLRILDTKNPAMQEMVNAAPKLLDYLGEESRA 240

Query: 241 HFEGVQKILNHNNIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRYDPLIEMF 300
           HFEGVQKIL HNNIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRYDPLIEMF
Sbjct: 241 HFEGVQKILRHNNIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRYDPLIEMF 300

Query: 301 GGKPTPACGFAMGVERLLELMKASGEQYAPNQCDVYMVHQGDEAQLQSFVLAERLRGAGL 360
           GGKPTPACGFAMGVERLLELMKASGEQYAPNQCDVY+VHQG++AQLQSFVLAERLR AGL
Sbjct: 301 GGKPTPACGFAMGVERLLELMKASGEQYAPNQCDVYLVHQGEDAQLQSFVLAERLRTAGL 360

Query: 361 DVVLHCASASAGGSFKSQMKKADASGAAFAVILGEDEVKNATATVKTLR---AAEGESNQ 417
           DVVLHCAS++ GGSFK+QMK+ADASGAAFAVI+GEDE+K  TATVK +R   A EG +NQ
Sbjct: 361 DVVLHCASSNGGGSFKAQMKRADASGAAFAVIIGEDELKGGTATVKHMREGNAEEGRANQ 420

Query: 418 VTIPFDGVTDYVVEQIVG 435
            ++PFDGV DY+VEQIVG
Sbjct: 421 NSLPFDGVVDYIVEQIVG 438


>gi|300312248|ref|YP_003776340.1| ATP phosphoribosyltransferase
           regulatory subunit [Herbaspirillum seropedicae SmR1]
          Length = 386

 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 135/334 (40%), Gaps = 31/334 (9%)

Query: 14  KGMNDILPADAPLWELFENTVHSVLKSYGFQQIRTPIVEPTALFSRGLGEVTDIVEKEMY 73
           + + D+LP++A   E     +    + YG++ +  P++E       G G+ TD+     +
Sbjct: 8   ENIADVLPSEARKIEELRRRLLDNFRLYGYEMVMPPLLEYLESLLTGAGQDTDL---RTF 64

Query: 74  SFTDSMNGDNLTLRPESTASVVRAALEHNLTYDGPKRLWYAGPMFRHERPQRGRY--RQF 131
              D ++G  L +R + T  V R    H L      RL YAG +  H RP  G +  R+ 
Sbjct: 65  KLVDQLSGRTLGVRADMTTQVARID-AHLLNRASVTRLCYAGSVL-HTRPT-GLHATREP 121

Query: 132 HQVGAEALGFTGPDIDAELIMMCQRLWDDLGLEDIRLELNSIGDAEERSKHRADLIAYFE 191
            Q+GAE  G  G + DAE+  +        G+  IRL+L  +G       + A       
Sbjct: 122 IQIGAEIYGHAGLEADAEIQELALNSLALAGMRTIRLDLCHVGVLRAIIANDAAAKRDEA 181

Query: 192 QHRELLDADAQRRLHSNPLRILDTKNPTMQGMVNGAPKLLDYLGEESRAH-----FEGVQ 246
           Q   LL A     L      I  T     +  +   P L   +   +RA        G+ 
Sbjct: 182 QLFALLQAKDVPGLQE----ITATYQEGTRAALLALPNLYGDISVIARARITLPALPGIA 237

Query: 247 KILN-----------HNNIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRYDP 295
           + L+           H     TI+   +RG  Y++  +F       G    V  GGRYD 
Sbjct: 238 QALDELQALVELAAGHEGAAVTIDLADLRGYHYHSGVMFSAYVP--GLPNAVVRGGRYDH 295

Query: 296 LIEMFGGKPTPACGFAMGVERLLELMKASGEQYA 329
           + E F G+  PA GF++ +  L  LM  +  + A
Sbjct: 296 VGEAF-GRARPATGFSLDLRELARLMPGAERKRA 328


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,418,677
Number of extensions: 63043
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 2
Length of query: 450
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 362
Effective length of database: 1,203,190
Effective search space: 435554780
Effective search space used: 435554780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)