BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0068.p
         (422 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312257|ref|YP_003776349.1| 4-hydroxy-3-methylbut-2-en-1-yl...   796   0.0  

>gi|300312257|ref|YP_003776349.1| 4-hydroxy-3-methylbut-2-en-1-yl
           diphosphate synthase [Herbaspirillum seropedicae SmR1]
          Length = 420

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/418 (91%), Positives = 403/418 (96%), Gaps = 2/418 (0%)

Query: 1   MSSSPFPIASGPLGRRQSRRAVIRYGEREVAVGGGAPVMVQSMTNTDTADAIGTAIQIKD 60
           MSSSP  IASGPL RR SRR VI +G RE+ VGGGAPVMVQSMTNTDTADAIGTAIQIKD
Sbjct: 1   MSSSP--IASGPLVRRNSRRVVISHGGREIVVGGGAPVMVQSMTNTDTADAIGTAIQIKD 58

Query: 61  LARAGSEVVRITVNSPEAAAAVPAIREQLDRMGVDVPLVGDFHYNGHTLLNDYPDCAKAL 120
           LARAGSEVVR+TVN+PEAAAAVPAIREQLDRMGVDVPLVGDFHYNGHTLL +YP+CA+AL
Sbjct: 59  LARAGSEVVRLTVNTPEAAAAVPAIREQLDRMGVDVPLVGDFHYNGHTLLTEYPECAQAL 118

Query: 121 SKYRINPGNVGKGAKRDSQFAQMIEAACRYDKPVRIGVNWGSLDQALLARIMDENAGRAE 180
           SKYRINPGNVGKGAKRD+QFAQMIE AC+YDKPVRIGVNWGSLDQALLARIMDENAGRAE
Sbjct: 119 SKYRINPGNVGKGAKRDTQFAQMIEVACKYDKPVRIGVNWGSLDQALLARIMDENAGRAE 178

Query: 181 PWPAQAVMYEALVTSAIENAQRAEELGLAGDKIILSCKVSGVQDLIAVYRELARRCDYPL 240
           PW AQAVMYEALVTSAIENAQRAEELG+AGDKIILSCKVSGVQDLIAVYRELARRCDYPL
Sbjct: 179 PWSAQAVMYEALVTSAIENAQRAEELGMAGDKIILSCKVSGVQDLIAVYRELARRCDYPL 238

Query: 241 HLGLTEAGMGSKGIVASTAALSVLLQEGIGDTIRISLTPEPGGDRTREVIVGQEILQTMG 300
           HLGLTEAGMGSKGIVASTAALSVLLQEGIGDTIRISLTPEPGGDRT+EV+VGQEILQTMG
Sbjct: 239 HLGLTEAGMGSKGIVASTAALSVLLQEGIGDTIRISLTPEPGGDRTKEVVVGQEILQTMG 298

Query: 301 LRKFTPMVIACPGCGRTTSTVFQDLADKIQTYLREQMPQWKGVYPGVESMNVAVMGCIVN 360
           LRKFTPMVIACPGCGRTTSTVFQDLADKIQT+LREQMP WKG YPGVE+MNVAVMGCIVN
Sbjct: 299 LRKFTPMVIACPGCGRTTSTVFQDLADKIQTFLREQMPVWKGKYPGVEAMNVAVMGCIVN 358

Query: 361 GPGESKHANIGISLPGTGESPAAPVFIDGEKRMTLRGERIAEEFQTIVLDYVQTHYGK 418
           GPGESKHANIGISLPGTGESPAAPVFIDGEK+MTLRGE IAEEFQ +VLDYV++HYG+
Sbjct: 359 GPGESKHANIGISLPGTGESPAAPVFIDGEKKMTLRGEHIAEEFQKVVLDYVESHYGQ 416


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,394,974
Number of extensions: 63382
Number of successful extensions: 220
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 334
Effective length of database: 1,203,190
Effective search space: 401865460
Effective search space used: 401865460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)