BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0062.p
         (230 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312261|ref|YP_003776353.1| FtsH interacting integral membr...   385   e-108

>gi|300312261|ref|YP_003776353.1| FtsH interacting integral membrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score =  385 bits (988), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/230 (86%), Positives = 210/230 (91%), Gaps = 1/230 (0%)

Query: 1   MNNYSQNTLENLNTGALARNRVLRNTYWLLALSMIPTVLGAWLGVQLHLSLFAGSPMIGF 60
           MNN    T  +  T    RNRVLRNTYWLLALSMIPTVLGAWLGVQLH SLFAGSPMI F
Sbjct: 1   MNNL-DTTFGHSTTSLATRNRVLRNTYWLLALSMIPTVLGAWLGVQLHFSLFAGSPMISF 59

Query: 61  VVFMAVAFGFFYAIEKTKNSGLGVAVLLGFTFFMGLMLSRLIEYTLGFSNGAQLIMTAFG 120
           V+F+A+AFGFFYAIEKTKNSGLGVA LLGFTFFMGLMLSRLIE+TLGFSNGA LIMTAFG
Sbjct: 60  VLFLAIAFGFFYAIEKTKNSGLGVAFLLGFTFFMGLMLSRLIEFTLGFSNGAGLIMTAFG 119

Query: 121 GTALIFGVMATVATVSKRDFSGMSKWLFAGVLVIIVASLANIFLQLPALQLTISVVAIAI 180
           GTA+IF  MAT+ATVSKRDFSG+ KWLFAGVLVI+VA+LANIFLQLPALQLTIS+VAIAI
Sbjct: 120 GTAIIFCGMATIATVSKRDFSGLGKWLFAGVLVILVAALANIFLQLPALQLTISMVAIAI 179

Query: 181 FSAYILFDVQQVINGGETNYISATLAIYLDVYNVFVNLLSILGIVGGNRD 230
           FSAYILFDVQQV+NGGETNYISATLAIYLDVYNVF NLLSILGIVGGNRD
Sbjct: 180 FSAYILFDVQQVVNGGETNYISATLAIYLDVYNVFANLLSILGIVGGNRD 229


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 584,936
Number of extensions: 19752
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,231,600
Effective search space: 182276800
Effective search space used: 182276800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)