BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0058.p
         (214 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312264|ref|YP_003776356.1| NlpD precursor lipoprotein [Her...   136   1e-33
gi|300313095|ref|YP_003777187.1| NlpD lipoprotein [Herbaspirillu...    96   3e-21

>gi|300312264|ref|YP_003776356.1| NlpD precursor lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 332

 Score =  136 bits (342), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/142 (61%), Positives = 101/142 (71%), Gaps = 7/142 (4%)

Query: 3   MKNNRLVWLGIVVSLLAGCSTTP-RTAAPVVERTTSSAKPAADPAKNVATAAARPEGKGY 61
           MK  RL  LG VVSLLA C +TP +  APVVERT+S+ K   D A   A  A    G+GY
Sbjct: 1   MKKIRLAVLGSVVSLLAACGSTPNQQPAPVVERTSSTGK-VVDAATAPAAPAP--SGRGY 57

Query: 62  YTVKKGDTLYRIALESGQSYRDIVAWNNLTNANDIKVDQVLRVSPPDGVQTGAVV--APA 119
           YTVKKGDTLYRIALE+GQ++RDIVAWNNLTN NDIKVDQ LRV+PPD     A      A
Sbjct: 58  YTVKKGDTLYRIALEAGQNWRDIVAWNNLTNPNDIKVDQTLRVAPPDRAPGTAQTAAIAA 117

Query: 120 AGASGIEVRPLGA-SSSAGAAP 140
           + A+G+EV+PLGA  +SA AAP
Sbjct: 118 SPAAGLEVKPLGAPGTSAPAAP 139



 Score = 91.3 bits (225), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 42/49 (85%), Positives = 47/49 (95%)

Query: 150 DDDAVSWMWPAEGKVVGTFDGGKKGVDIAGKSGQPVMAAGAGKVMYAGA 198
           DD+ VSWMWPAEGKVVGTF+GGKKGVDIAGK+GQ V+AAGAGKVMYAG+
Sbjct: 210 DDEGVSWMWPAEGKVVGTFEGGKKGVDIAGKAGQAVLAAGAGKVMYAGS 258


>gi|300313095|ref|YP_003777187.1| NlpD lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 254

 Score = 95.5 bits (236), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/176 (40%), Positives = 91/176 (51%), Gaps = 10/176 (5%)

Query: 32  VERTTSSAKPAADPAKNVATAAARPEGKGYYTVKKGDTLYRIALESGQSYRDIVAWNNLT 91
             RTT+ A         +A  A+  +  GYYTVK+GDTLY I  +  QS  ++  WN L 
Sbjct: 4   FHRTTALAALPLALVLLLAGCASTADSDGYYTVKRGDTLYSIGRDFDQSPANLRTWNRLR 63

Query: 92  NANDIKVDQVLRVSPPDGV--QTGA-VVAPAAGASGIEVRPLGASSSAGAAPAATXAAAA 148
           N +D++V Q + V PP GV  +TGA      A +S       G+   A + P A  AA  
Sbjct: 64  NPDDLEVGQRILVRPPVGVVARTGAGQSPRPAASSSPSASGSGSRKPAPSRPTAKPAAKP 123

Query: 149 GDDDA-------VSWMWPAEGKVVGTFDGGKKGVDIAGKSGQPVMAAGAGKVMYAG 197
            DDDA       V W WP  GK   + D  KKG+DI G  GQ V+AA AGKV YAG
Sbjct: 124 QDDDAPAGAEAKVDWSWPTAGKSAPSADSYKKGIDIIGSEGQSVVAAAAGKVTYAG 179


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.128    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 609,227
Number of extensions: 22814
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 3
Length of query: 214
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 133
Effective length of database: 1,236,335
Effective search space: 164432555
Effective search space used: 164432555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)