BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0057.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312265|ref|YP_003776357.1| protein-L-isoaspartate carboxyl...   421   e-119
gi|300309824|ref|YP_003773916.1| protein-L-isoaspartate O-methyl...    85   9e-18

>gi|300312265|ref|YP_003776357.1| protein-L-isoaspartate
           carboxylmethyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 321

 Score =  421 bits (1082), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/321 (69%), Positives = 245/321 (76%), Gaps = 17/321 (5%)

Query: 1   MTGKSSRFPLSLSSVVEKKGKAASG--APARTVVTPQTATRNAALDSGRLAAK------- 51
           M+ K+SRFPLSLSSVV+KK  A  G  A  R   T QTA +NAA  S R A K       
Sbjct: 1   MSDKTSRFPLSLSSVVDKKKAAGVGRDAAGRPQATTQTAAKNAAQSSQRAALKPVQQGLA 60

Query: 52  --------AQAARAAQHPAPSSSAGKPATPVSRTALPTPIATANRSAPLVSEAVRKAMVA 103
                      A         S+A  P T VS     T    ++ ++PL SEAVRKAMVA
Sbjct: 61  QALRPPPAPPRAPVPPAQPLLSAAPVPRTAVSNVMTVTQTNASHHASPLASEAVRKAMVA 120

Query: 104 RVAKQGVSDQKVLAAMEAVPRHMFMEPGLSSQAYIDASLPIGHHQTISQPYIVARMIEIM 163
           RVAKQGV+D KVLAA+EAVPRHMF+EPGL+SQAYIDASLPIGHHQTISQPYIVARMIEIM
Sbjct: 121 RVAKQGVADAKVLAALEAVPRHMFVEPGLASQAYIDASLPIGHHQTISQPYIVARMIEIM 180

Query: 164 RDNNKGKALERVLEIGTGCGYQAAVLSLVAKEVYSIERIKPLHELAKTNLRPLRIANIRL 223
           R N  G  L+RVLEIGTGCGYQAAVLS VA EVYSIERIKPLHELAKTNLRPLR+ANIRL
Sbjct: 181 RQNRHGGRLDRVLEIGTGCGYQAAVLSRVAGEVYSIERIKPLHELAKTNLRPLRVANIRL 240

Query: 224 HYGDGMLGLPQVAPFDGIILAAAGLEVPQALLEQLAIGGRLVAPVGGRQQMLQLIERISK 283
           HYGDGMLGLPQVAPFDGIILAAAGLEVPQALLEQLA+GGRLVAPVG RQQ+L+LIER+  
Sbjct: 241 HYGDGMLGLPQVAPFDGIILAAAGLEVPQALLEQLAVGGRLVAPVGERQQVLELIERVGP 300

Query: 284 FEWTSETLEECHFVPLRPGTV 304
            +W   TLE+CHFVPLRPGTV
Sbjct: 301 RDWRRTTLEQCHFVPLRPGTV 321


>gi|300309824|ref|YP_003773916.1| protein-L-isoaspartate
           O-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score = 84.7 bits (208), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 101/193 (52%), Gaps = 9/193 (4%)

Query: 113 QKVLAAMEAVPRHMFMEPGLSSQAYIDASLPIGHHQTISQPYIVARMIEIMRDNNKGKAL 172
           Q VL  +  V R  F+     S A+ D  +P+   + +  P I AR   I+++ N  K  
Sbjct: 23  QDVLDLLMVVKREEFVPAAHRSLAFFDTEIPLPGGENMLAPKIEAR---ILQEANVKKH- 78

Query: 173 ERVLEIGTGCGYQAAVLSLVAKEVYSIERIKPLHELAKTNLRPLRIANIRLHYGDGMLGL 232
           E VLEIG G GY AA+L+  A+ V ++E    L  LA+ NL    +AN+ +  G+G  G 
Sbjct: 79  EYVLEIGAGSGYMAALLAHKARHVTTVEISPELKALAERNLSDYGVANVDVQLGNGAQGW 138

Query: 233 ----PQVAPFDGIILAAAGLEVPQALLEQLAIGGRLVAPVGGRQQM-LQLIERISKFEWT 287
                + A +D I+++ +   +P+A  +QL IGGRL+A VG    M LQLI R S+  + 
Sbjct: 139 VGADGKAAEYDVIVISGSLPVLPEAFGKQLKIGGRLLAIVGSLPVMELQLITRTSEHAFE 198

Query: 288 SETLEECHFVPLR 300
           +  + E    PL 
Sbjct: 199 TVNVVETLAKPLH 211


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 869,683
Number of extensions: 33944
Number of successful extensions: 217
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)