BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0056.p
         (121 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312266|ref|YP_003776358.1| stationary-phase survival prote...   201   1e-53

>gi|300312266|ref|YP_003776358.1| stationary-phase survival protein
           [Herbaspirillum seropedicae SmR1]
          Length = 262

 Score =  201 bits (512), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 91/121 (75%), Positives = 107/121 (88%)

Query: 1   LHKGWEHLDSAARVAREVVERQFDAIAKPYLLNVNIPNLPYAELKSCVATRLGKRHMSEP 60
           LHKGW  L SAAR+ARE+VER+FDA+ +PYLLNVNIPNLPY E+K   ATRLGKRH+SEP
Sbjct: 142 LHKGWAELKSAARIAREIVERRFDALPQPYLLNVNIPNLPYEEIKGTQATRLGKRHVSEP 201

Query: 61  VYKMRDPHGKDIYWIGPPGGVKDAGEGTDFHATANGHVSITPLRIDLTHTSQLADLKKAL 120
           V+K+ DPHG+D+YWIGP G  +D GEGTDFHATA G+VSITPL+IDLTHT+QLA+LKKAL
Sbjct: 202 VHKLTDPHGRDLYWIGPAGAARDGGEGTDFHATAQGYVSITPLQIDLTHTAQLANLKKAL 261

Query: 121 A 121
           A
Sbjct: 262 A 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 425,789
Number of extensions: 17533
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 47
Effective length of database: 1,269,480
Effective search space: 59665560
Effective search space used: 59665560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)