BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0053.p
         (518 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312268|ref|YP_003776360.1| ATP-dependent DNA helicase [Her...   879   0.0  

>gi|300312268|ref|YP_003776360.1| ATP-dependent DNA helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 747

 Score =  879 bits (2271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/534 (79%), Positives = 463/534 (86%), Gaps = 28/534 (5%)

Query: 1   MKTTSSGDKAELSKVPENALIWNLVTSTRDTCFGAECQYYQDCFVMKARKEAQQADVVVV 60
           +K+TSSGDKAEL+KVPE A +WNLVTSTRDTCFGAECQYYQDCFVMKARKEAQQADVVVV
Sbjct: 194 VKSTSSGDKAELTKVPETASVWNLVTSTRDTCFGAECQYYQDCFVMKARKEAQQADVVVV 253

Query: 61  NHHLFFADVALKDTGVAELLPTANTVIFDEAHQLPETATMFFGDTVSTSQVLELCRDVLA 120
           NHHLFFADVALKDTG+AELLP+ANTVIFDEAHQLP+TAT+FFG+T+STSQ+LELCRDVLA
Sbjct: 254 NHHLFFADVALKDTGIAELLPSANTVIFDEAHQLPDTATLFFGETISTSQILELCRDVLA 313

Query: 121 EGLSHARDGADWAKVVAPVEKAARDLRLAFPEDIVRLAVNQIAPSSVFFPALETLRDNMD 180
           EGLSHARDGADWA++VAPVE+AARDLRLAF ED VRLA+NQIAPSS FFPAL+TL+D MD
Sbjct: 314 EGLSHARDGADWARLVAPVERAARDLRLAFSEDSVRLALNQIAPSSTFFPALDTLKDCMD 373

Query: 181 GMIAVLEKQAERAETIEQCRTRAIELSHQLEKW--------------------------- 213
            MI VLEKQAERAETIEQCR RA EL  QLE W                           
Sbjct: 374 DMITVLEKQAERAETIEQCRDRANELLRQLENWGTPEELEKIQAEAAAKAAAKPAEAKRA 433

Query: 214 -NGAQDKAASEDGQTYVLWVEAFTSSLQLHRTPLSIAPIFNKQREGVPRTWIFTSATLAV 272
            +G + +  S     YVLWVEAF SSLQLHRTPLSIAPIFNKQREG PR+WIFTSATLAV
Sbjct: 434 ESGDEQQEPSGQKPFYVLWVEAFQSSLQLHRTPLSIAPIFNKQREGTPRSWIFTSATLAV 493

Query: 273 KNDFHHYTSQMGLWDEPAKSWPSPFDYEQQGLLYVPNNLPQPNSYEYTDAVIDAALPAII 332
           K DF+HY +QMGLW+ PA+SWPSPF+Y +QG+LYVP NLPQPNS+EYTDAVIDAALP I 
Sbjct: 494 KKDFNHYAAQMGLWNAPAQSWPSPFNYGEQGILYVPQNLPQPNSFEYTDAVIDAALPIIE 553

Query: 333 AAGGRTFLLCTTIRAVNRAAERLREEFEQRGLPFPLMVQGEAGRTELLDRFRASGNGVLI 392
           AAGGR F LCTT+RAVNRAAERLR EFE RG  FPL VQGEAGRTELLDRFRA+GNGVLI
Sbjct: 554 AAGGRCFFLCTTLRAVNRAAERLRAEFEARGHAFPLFVQGEAGRTELLDRFRAAGNGVLI 613

Query: 393 GSQSFWEGVDVRGDALSLVIIDKLPFSPPDDPVLAARIAELEKKGLNGFVHHQLPAAIIN 452
           GSQSFWEGVDVRGDALSLVIIDKLPFSPPDDPVLAARI+E+EK+GLNGFVHHQLPAAIIN
Sbjct: 614 GSQSFWEGVDVRGDALSLVIIDKLPFSPPDDPVLAARISEMEKQGLNGFVHHQLPAAIIN 673

Query: 453 LKQGAGRLIRDETDRGVLMICDPRLISKGYGRRIWQSLPPFKRTREIGMVEDFF 506
           LKQGAGRLIRDE DRGVLMICDPR+I+K YGRRIWQSLPPFKRTRE  +V+ FF
Sbjct: 674 LKQGAGRLIRDEGDRGVLMICDPRIITKNYGRRIWQSLPPFKRTREQEVVQAFF 727


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,627,389
Number of extensions: 70787
Number of successful extensions: 205
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 429
Effective length of database: 1,198,455
Effective search space: 514137195
Effective search space used: 514137195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)