BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0049.p
         (259 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312269|ref|YP_003776361.1| hypothetical protein Hsero_2965...   166   2e-42

>gi|300312269|ref|YP_003776361.1| hypothetical protein Hsero_2965
           [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score =  166 bits (420), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/197 (47%), Positives = 142/197 (72%), Gaps = 1/197 (0%)

Query: 44  FNERYPSGSIRSTDEADEILAEADKERLIIEDQYIAEQRDCYKKFFVAACLDGAKERNRV 103
             +RYP+GSI+S + A  +L E  ++R  ++ +Y+ +QR C  KF V  CL+ A++R R+
Sbjct: 77  IRQRYPAGSIKSVEMAQAVLDEVAEDRQAVQLRYVLDQRACAPKFLVNKCLEEARDRKRL 136

Query: 104 AGKQVRDVEVEANAYKRQAKADDRDKSLAEQRVKDEQDSARRAADQKERDAAAARKVQES 163
           A K ++  E EAN ++RQA  DDRD+SLA+QR KD++D+ARR A+QK+++A +ARKVQES
Sbjct: 137 AEKDLKQAEYEANVFQRQANVDDRDRSLADQRAKDQEDAARRQAEQKQKEADSARKVQES 196

Query: 164 AAKQQQVKER-EQQSEGKEDARVKAHDAQLREKQAADAAKAPQRQANEKAYQEKVKAAEV 222
            AK ++V++R +   +   D RV+ H+A+ R+++A DAA+AP+R AN    Q +++ AE 
Sbjct: 197 NAKNREVQQRIDANKDVPADYRVREHEAKQRQQRAEDAARAPERAANAAERQRRIQEAEQ 256

Query: 223 HRKEVETNKAEKDRERA 239
           HR EVE NKAEK+RERA
Sbjct: 257 HRLEVERNKAEKERERA 273


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.309    0.123    0.328 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 565,459
Number of extensions: 17434
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,226,865
Effective search space: 215928240
Effective search space used: 215928240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 129 (54.3 bits)