BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0047.p
         (270 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312270|ref|YP_003776362.1| ATPase [Herbaspirillum seropedi...   340   9e-95

>gi|300312270|ref|YP_003776362.1| ATPase [Herbaspirillum seropedicae
           SmR1]
          Length = 365

 Score =  340 bits (871), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 158/180 (87%), Positives = 174/180 (96%)

Query: 1   MDVREFYDHALSERGFKSDEAQQRAIDRLQRAYEEWVAFKAQRSSSFKRLINRPDVPRGV 60
           MDVR+FY+ +LS+RG++ DEAQ RAI+RLQRAYEEWVA+KAQR+S+FKRLI+RP VPRGV
Sbjct: 1   MDVRQFYEQSLSQRGYQPDEAQLRAIERLQRAYEEWVAYKAQRASTFKRLISRPAVPRGV 60

Query: 61  YMWGGVGRGKSFLMDSFYSVVPVVRKTRVHFHEFMRDVHRQLDELKGIANPLDDVAKRIA 120
           YMWGGVGRGKSFLMDSFYSVVPVVRKTR+HFHEFMRDVHRQLDELKGIA+PLD+VAKRIA
Sbjct: 61  YMWGGVGRGKSFLMDSFYSVVPVVRKTRLHFHEFMRDVHRQLDELKGIADPLDEVAKRIA 120

Query: 121 KKYRLICFDEFHVSDIADAMILYNLLSGLFDNGVSFVMTSNYKPDTLYPDGLHRDRMLPT 180
           KKYRLICFDEFHVSDIADAMILYNLL GLFD+GVSFVMTSNY+P TLYPDGLHRDRMLPT
Sbjct: 121 KKYRLICFDEFHVSDIADAMILYNLLKGLFDHGVSFVMTSNYEPSTLYPDGLHRDRMLPT 180


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 839,214
Number of extensions: 33197
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,222,130
Effective search space: 227316180
Effective search space used: 227316180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)