BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0044.p
         (218 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312272|ref|YP_003776364.1| dihydrolipoamide succinyltransf...   433   e-123
gi|300310786|ref|YP_003774878.1| dihydrolipoamide acetyltransfer...   147   8e-37

>gi|300312272|ref|YP_003776364.1| dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex protein [Herbaspirillum
           seropedicae SmR1]
          Length = 413

 Score =  433 bits (1113), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 205/218 (94%), Positives = 217/218 (99%)

Query: 1   VAERLLQSQATNAILTTFNEVNMQPVLDLRAKYKDKFEKEHGVKLGFMSFFVKAVVHALK 60
           VAERL+QSQ+TNAILTTFNE+NMQPV+DLR KYKDKFEKEHGVKLGFMSFFVKAVVHALK
Sbjct: 196 VAERLVQSQSTNAILTTFNEINMQPVIDLRNKYKDKFEKEHGVKLGFMSFFVKAVVHALK 255

Query: 61  KYPIVNASVDGNDIVYHGYFDIGVAVGSPRGLVVPVLRDADQLSIADIEKKIGEFGQKAK 120
           KYPIVNASVDGNDIVYHGYFDIGVAVGSPRGLVVP+LRDADQ+SIADIEKKIGEFGQKAK
Sbjct: 256 KYPIVNASVDGNDIVYHGYFDIGVAVGSPRGLVVPILRDADQMSIADIEKKIGEFGQKAK 315

Query: 121 DGKLSIEEMTGGTFTVSNGGTFGSMLSTPIINPPQSAILGIHATKDRAVVENGQIVIRPM 180
           DGKLSIEE++GGTFTVSNGGTFGSMLSTPIINPPQSAILGIHATK+RAVVENGQ+V+RP+
Sbjct: 316 DGKLSIEELSGGTFTVSNGGTFGSMLSTPIINPPQSAILGIHATKERAVVENGQVVVRPI 375

Query: 181 NYFALSYDHRIIDGREAVLSLVAIKEALEDPARLLLDL 218
           NYFALSYDHRIIDGREAVLSLVAIKEALEDPARLLLDL
Sbjct: 376 NYFALSYDHRIIDGREAVLSLVAIKEALEDPARLLLDL 413


>gi|300310786|ref|YP_003774878.1| dihydrolipoamide acetyltransferase
           component of pyruvate dehydrogenase complex
           [Herbaspirillum seropedicae SmR1]
          Length = 554

 Score =  147 bits (370), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 78/183 (42%), Positives = 114/183 (62%), Gaps = 3/183 (1%)

Query: 15  LTTFNEVNMQPVLDLRAKYKDKFEKEHG-VKLGFMSFFVKAVVHALKKYPIVNASVD--G 71
           +T F+E ++  + + R    D F K    VKL  ++F +KA V ALKK+P  N+S+D  G
Sbjct: 350 VTQFDEADVTELEEFRKTSNDAFAKAKSPVKLTMLAFVIKASVSALKKFPAFNSSLDAKG 409

Query: 72  NDIVYHGYFDIGVAVGSPRGLVVPVLRDADQLSIADIEKKIGEFGQKAKDGKLSIEEMTG 131
            +++   +++IG A  +P GLVVPV+++ADQ SI  I  ++GE   +A+DGKL   +M G
Sbjct: 410 ENLILKKFYNIGFAADTPNGLVVPVIKNADQKSIGQIAIEMGELSAQARDGKLKPADMQG 469

Query: 132 GTFTVSNGGTFGSMLSTPIINPPQSAILGIHATKDRAVVENGQIVIRPMNYFALSYDHRI 191
            TFT+S+ G  G    TPIIN P+ AILG+  +  + V +  Q V R M   +LSYDHR+
Sbjct: 470 ATFTISSLGGIGGTAFTPIINAPEVAILGLSKSITKPVWDGKQFVPRLMLPTSLSYDHRV 529

Query: 192 IDG 194
           IDG
Sbjct: 530 IDG 532


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.138    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 691,600
Number of extensions: 29269
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 218
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,231,600
Effective search space: 167497600
Effective search space used: 167497600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)