BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0039.p
         (521 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311961|ref|YP_003776053.1| bifunctional precorrin-3 methyl...   821   0.0  

>gi|300311961|ref|YP_003776053.1| bifunctional precorrin-3
           methyltransferase/precorrin-6x reductase oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 519

 Score =  821 bits (2120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/510 (78%), Positives = 444/510 (87%), Gaps = 5/510 (0%)

Query: 3   GVLNLVSVGPGFGDLIVPRAIAALRDSNVIVAYELYLRWISSHIEGKEIHTPPLTQERER 62
           GVLNLVSVGPGF ++I+PRAI ALR+S VIVAYELYLRWI++HIEGKEIHTPPLTQERER
Sbjct: 8   GVLNLVSVGPGFEEMIIPRAIEALRESEVIVAYELYLRWIAAHIEGKEIHTPPLTQERER 67

Query: 63  ALLAIDKARSGEKVALISSGDIGIYAMAALAFDEMKEDDDYQVNVIPGVTSANACASLLG 122
           ALLAI++AR+G +VALISSGDIGIYAMAALAFD+M+EDD Y+VNVIPGVTSANACASLLG
Sbjct: 68  ALLAIEQARAGRRVALISSGDIGIYAMAALAFDDMREDDTYEVNVIPGVTSANACASLLG 127

Query: 123 SPLSHDFATLSLSNLLCPWEWIENRARHIAQADLACVLYNVQSAGRQEGVYRILKLMLES 182
           SPLSHDFATLSLSNLLCPW WIE RA HIAQADLACVLYNVQSAGRQEGVYRIL+LML+ 
Sbjct: 128 SPLSHDFATLSLSNLLCPWTWIEQRASHIAQADLACVLYNVQSAGRQEGVYRILQLMLQH 187

Query: 183 KAPHTLCGVVKNAYRPGQEVSIHRLDELPSLQFDMLTSIVIGNRFTQRKRGYIFTPRGYN 242
           KAPHTLCGVV+NAYRPGQ+V+IHRLDELP LQFDMLTSIVIGNRFTQRKR +IFTPRGYN
Sbjct: 188 KAPHTLCGVVRNAYRPGQKVTIHRLDELPGLQFDMLTSIVIGNRFTQRKRDWIFTPRGYN 247

Query: 243 DWHDESVVAAEEPA-LPSQAVWVFAGTSDGNALAKQLAAQGHQVVVSTATEYGGELALQD 301
           DW +ES   AEE A LPSQAVWVFAGTSDGNALA +LA QG  VVVSTAT YGGELA  D
Sbjct: 248 DWSEES--QAEEVAQLPSQAVWVFAGTSDGNALAAELAGQGRPVVVSTATGYGGELARGD 305

Query: 302 CPGVTVWAGRQGVEARKQALLRHEARVLVDATHPYATLMSQQLMGLSQSLGVPYLRYERP 361
           CPG  VW+GRQG+EAR+QAL    ARVLVDATHP+A  MSQQLM LSQ LG+PYLRYERP
Sbjct: 306 CPGAFVWSGRQGLEARRQALRDSRARVLVDATHPFAVQMSQQLMTLSQELGIPYLRYERP 365

Query: 362 SAIADIANHALVCDSMEQAAEQAIARGERIFLATGSKDLATFLQAPGADRKQWFVRVTAE 421
             +A    HA  C  ME AA +A+A G+RIFLATGSKDLATFLQAPGA  +QWF RVTA+
Sbjct: 366 GELAADDPHA--CADMEDAAHKAMAMGQRIFLATGSKDLATFLQAPGAQERQWFARVTAD 423

Query: 422 PEFIQRAIDLGIPRSRICAMQGPFSQGFNEALWRDWNIDCVVTKDSGDAGGYRAKADAAK 481
           P+FI RA++LG+PR+ +CAMQGPFSQ FNEALWRDW IDCVVTKDSG+AGGY AKA+AA+
Sbjct: 424 PDFISRALELGLPRAHLCAMQGPFSQAFNEALWRDWGIDCVVTKDSGEAGGYHAKAEAAR 483

Query: 482 ALNIPLLTVRRPALDYPVQAGNLDEALAQV 511
           AL IPLLTVRRP LDYP  A +     A +
Sbjct: 484 ALGIPLLTVRRPPLDYPQVAHDFGSVRAHL 513


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,682,751
Number of extensions: 69897
Number of successful extensions: 221
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 431
Effective length of database: 1,193,720
Effective search space: 514493320
Effective search space used: 514493320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)